Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq4168 123 1e-23 seq95 123 1e-23 seq3066 122 5e-23 seq1926 122 5e-23 seq1308 118 6e-22 seq409 118 6e-22 seq384 118 6e-22 seq361 116 2e-21 seq2966 114 7e-21 seq621 113 2e-20 seq200 113 2e-20 seq1748 111 8e-20 seq31 89.7 3e-13 >seq4168 Length=53669 Score = 123 bits (136), Expect = 1e-23 Identities = 84/94 (89%), Gaps = 1/94 (1%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||||| |||||| || | ||||||||| |||||||||| ||||||||||||||||| Sbjct 29367 AATTAAATAAAAATTAAGT-GGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTA 29309 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||||| ||||||||||||||||||||| Sbjct 29308 GCACGACGCTCTAACCAACTGAGCTAATGGGCCG 29275 >seq95 Length=4635338 Score = 123 bits (136), Expect = 1e-23 Identities = 78/85 (92%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| ||| |||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 2197043 AAAAATGAAAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACG 2197102 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||||||||| Sbjct 2197103 CTCTAACCAACTGAGCTAATGGGCC 2197127 >seq3066 Length=90406 Score = 122 bits (134), Expect = 5e-23 Identities = 79/86 (92%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| ||| |||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 28787 AAAAAT-AAAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACG 28729 Query 11505 CTCTRACCAACTGAGCTAATGGGCCG 11530 |||| ||||||||||||||||||||| Sbjct 28728 CTCTAACCAACTGAGCTAATGGGCCG 28703 >seq1926 Length=347293 Score = 122 bits (134), Expect = 5e-23 Identities = 78/86 (91%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| || |||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 123490 AAAAATGTAAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACG 123549 Query 11505 CTCTRACCAACTGAGCTAATGGGCCG 11530 |||| ||||||||||||||||||||| Sbjct 123550 CTCTAACCAACTGAGCTAATGGGCCG 123575 Score = 120 bits (132), Expect = 2e-22 Identities = 79/87 (91%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 11446 AAAATCA-AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||| || || |||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 50288 AAAAACATAAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACG 50347 Query 11505 CTCTRACCAACTGAGCTAATGGGCCGT 11531 |||| |||||||||||||||||||||| Sbjct 50348 CTCTAACCAACTGAGCTAATGGGCCGT 50374 Score = 118 bits (130), Expect = 6e-22 Identities = 78/87 (90%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| || |||||||||| |||||||||| ||||||||||||| ||||||||||| Sbjct 64672 AAAAATGTAAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTGTTAGCACGACG 64731 Query 11505 CTCTRACCAACTGAGCTAATGGGCCGT 11531 |||| |||||||||||||||||||||| Sbjct 64732 CTCTAACCAACTGAGCTAATGGGCCGT 64758 >seq1308 Length=176651 Score = 118 bits (130), Expect = 6e-22 Identities = 78/86 (91%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| || | ||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 144527 AAAAATGAAGT-GGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACG 144469 Query 11505 CTCTRACCAACTGAGCTAATGGGCCG 11530 |||| ||||||||||||||||||||| Sbjct 144468 CTCTAACCAACTGAGCTAATGGGCCG 144443 >seq409 Length=1956742 Score = 118 bits (130), Expect = 6e-22 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 1625761 AATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 1625820 Query 11513 AACTGAGCTAATGGGCC 11529 ||||||||||||||||| Sbjct 1625821 AACTGAGCTAATGGGCC 1625837 >seq384 Length=1223498 Score = 118 bits (130), Expect = 6e-22 Identities = 78/87 (90%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 || ||||| | | |||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 451714 TACAAAATTATAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGA 451773 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||||||||||||| Sbjct 451774 CGCTCTAACCAACTGAGCTAATGGGCC 451800 >seq361 Length=2112559 Score = 116 bits (128), Expect = 2e-21 Identities = 77/85 (91%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| || | ||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 602946 AAAAATTAAGT-GGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACG 603004 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||||||||| Sbjct 603005 CTCTAACCAACTGAGCTAATGGGCC 603029 >seq2966 Length=80763 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 9426 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 9367 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 9366 TGAGCTAATGGGCCG 9352 >seq621 Length=780695 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 301352 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 301411 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 301412 TGAGCTAATGGGCC 301425 >seq200 Length=3660332 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1347289 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1347230 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 1347229 TGAGCTAATGGGCC 1347216 >seq1748 Length=159005 Score = 111 bits (122), Expect = 8e-20 Identities = 80/92 (87%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||||| ||| | || |||||||||| |||||||||| ||||||||| |||||||| Sbjct 36790 TTAATACAAATT--AAGTGGCCCATGAGGGGATCGAACCCGTGACCTTCGCATTATTAGC 36733 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||| ||||||||||||||||||||| Sbjct 36732 ACGACGCTCTAACCAACTGAGCTAATGGGCCG 36701 >seq31 Length=3735608 Score = 89.7 bits (98), Expect = 3e-13 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| |||||||||||||||||||||||| |||| |||||| Sbjct 3115983 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACACTCTAACCAAC 3115924 Query 11516 TGAGCTAATGG 11526 ||| || ||| Sbjct 3115923 TGAAGTAGTGG 3115913 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261295618474120