Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq154 122 8e-23 seq1481 95.1 1e-14 seq1475 89.7 5e-13 >seq154 Length=1683969 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||||| | ||||| |||||||| | || || || || || | ||| || || | Sbjct 579058 CCTCCTCGAAGTCGCAGGACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 578999 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| |||||||| ||||| | ||||| | || ||||| ||||||||| Sbjct 578998 AGAGTACGGCCATCTTCCAGCTGCTTTCCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGA 578939 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| || || | || || ||||| || | | ||| |||| | || || Sbjct 578938 ATTCCTTCCTTATCTTGGATCTTGGCCTTAACATTCTCAATAGTATCAGATGGCTCAACT 578879 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||||||||| ||||| |||||||| ||||||||||| Sbjct 578878 TCCAAGGTGATGGTTTTTCCTGTAAGGGTTTTCACGAAGATCTGCAT 578832 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||||| || ||||| |||||||| | || || ||||| || | ||| || || Sbjct 579795 CCTCCTCGCAGTCGCAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAG 579736 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | ||| ||||||||||| || | ||||| | || ||||| ||||||||| Sbjct 579735 AGGGTACGGCCATCTTCCAGCTGTTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGA 579676 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| || || | || || ||||| || | | ||| || | | || || Sbjct 579675 ATTCCTTCCTTATCTTGGATCTTGGCCTTAACATTCTCAATAGTATCGGATGGCTCAACT 579616 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||||||||| ||||| |||||||| ||||||||||| Sbjct 579615 TCCAAGGTGATGGTTTTTCCTGTAAGGGTTTTCACGAAGATCTGCAT 579569 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||||| || ||||| |||||||| | || || ||||| || | ||| || || Sbjct 580251 CCTCCTCGCAGTCGCAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAG 580192 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | ||| |||||||| ||||| | ||||| | || ||||||||||| ||| Sbjct 580191 AGGGTACGGCCATCTTCCAGCTGCTTTCCAGCGAAGATAAGTCGCTGCTGATCTGGGGGA 580132 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| || || | ||| || |||||||| | | || || | | || || Sbjct 580131 ATTCCTTCCTTATCTTGAATCTTAGCCTTGACATTCTCAATGGTATCGGATGGCTCAACT 580072 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||||||||||| || || | || ||||| ||||||||||| Sbjct 580071 TCCAAAGTGATGGTTTTACCGGTCAATGTCTTCACGAAGATCTGCAT 580025 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||||| | ||||| |||||||| | || || ||||| || | ||| || ||| Sbjct 578602 CCTCCTCGAAGTCGCAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAG 578543 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | ||| ||||| || || || | ||||| | || ||||| ||||||||| Sbjct 578542 AGGGTACGGCCATCTTCCAGTTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGA 578483 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| || || | ||| || |||||||| | | || || | | || || Sbjct 578482 ATTCCTTCCTTATCTTGAATCTTAGCCTTGACATTCTCAATGGTATCGGATGGCTCAACT 578423 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||||| ||||| ||||| | || ||||| ||||||||||| Sbjct 578422 TCTAAAGTGATAGTTTTACCAGTCAATGTCTTCACGAAGATCTGCAT 578376 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||||| | ||||| |||||||| | || || || || || | ||| || || | Sbjct 580023 CCTCCTCGTAGTCGCAGGACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 579964 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | ||| ||||| || || || | ||||| | || ||||| ||||||||| Sbjct 579963 AGGGTACGGCCATCTTCCAGTTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGA 579904 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| || || | |||||| |||||||| | | || |||| | || || Sbjct 579903 ATTCCTTCCTTATCTTGAATTTTGGCCTTGACATTCTCAATGGTATCAGATGGCTCAACT 579844 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||||||||||| || || | || ||||| || |||||||| Sbjct 579843 TCCAAAGTGATGGTTTTACCGGTCAATGTCTTCACGAAAATCTGCAT 579797 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTC 94868 ||||||||||| || | ||| || || | || ||| | |||||| ||||| |||| Sbjct 580449 GTAGATTCCTTCTGGATGTTGTAGTCCG--AAAGGGTTCGGCCATCCTCAAGCTGCTTTC 580392 Query 94869 CGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCT 94928 | | ||||| | || ||||| ||||||||||| ||||| || || | || ||| |||| Sbjct 580391 CAGCGAAGATAAGTCGCTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGAACTTTAGCCT 580332 Query 94929 TGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAG 94988 |||| | | || |||| | || || || | || || || ||||| || || | Sbjct 580331 TGACATTTTCAATGGTATCAGATGGCTCAACCTCCAAGGTAATTGTCTTTCCTGTTAGGG 580272 Query 94989 TTTTCACAAAGATCTGCAT 95007 | ||||| || |||||||| Sbjct 580271 TCTTCACGAAAATCTGCAT 580253 >seq1481 Length=432034 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/155 (74%), Gaps = 4/155 (3%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||| |||| ||| | ||| | || || |||||||| | ||| ||||| Sbjct 222096 CCACCTCTCAGACGCAGCACAAGGTGAAGTGTGGACTCCTTTTGAATGTTGTAATCAG-- 222153 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | ||||| || ||| |||| ||||||||| |||| || ||||| ||||| ||||| | Sbjct 222154 AAAGTGTGCGACCATCTTCCAACTGTTTTCCTGCAAAAATCAATCTCTGCTGGTCTGGGG 222213 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 | || ||||||||||| | || || ||||| ||| Sbjct 222214 GGATTCCTTCTTTGTCTTGGATCTTAGCCTTCACG 222248 >seq1475 Length=480095 Score = 89.7 bits (98), Expect = 5e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || | |||||| ||| |||| || | || ||||| ||||| || || || || || Sbjct 62687 ATCTTCTAACTGTTTACCGGCAAAAATCAGTCGCTGCTGGTCTGGGGGGATTCCCTCCTT 62746 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || ||||||||||| | | |||||| | | ||||| |||| || || Sbjct 62747 ATCCTGTATCTTTGCCTTGACATTTTCAATAGTGTCTGATGGCTCGACCTCAAGGGTAAT 62806 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 |||||| || || || ||||||||||| || |||||| Sbjct 62807 GGTTTTACCCGTGAGGGTTTTCACAAAAATTTGCATG 62843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447947304613200