Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq1654 116 7e-22 seq3448 96.9 7e-16 seq3242 96.9 7e-16 seq9565 95.1 2e-15 seq733 84.2 4e-12 seq4770 82.4 1e-11 seq2730 80.6 5e-11 seq2260 80.6 5e-11 >seq1654 Length=165633 Score = 116 bits (128), Expect = 7e-22 Identities = 261/391 (67%), Gaps = 16/391 (4%) Strand=Plus/Plus Query 7272 CATGTCCGTATTGACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAA 7331 |||||| ||||||||||||||| || || | || ||||| ||||| || || Sbjct 135887 CATGTCAGTATTGACATGATCACTGCAAGCGTGGTGTAGGTTCATATCATCCTGTTTAAA 135946 Query 7332 CAGCACGAGAAAGTTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTG 7391 || | | ||| |||| ||| ||||||| ||| || || ||||| | | || ||||| Sbjct 135947 GAGTATTATAAAATTTGAATTGTCTCTAACCAGCTGTTTCGGTATGTGACTGTAGGTTTG 136006 Query 7392 ACAGAGATAGAAGCTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTG 7451 || |||||||| | || || | |||||| | ||||| ||| || ||| | Sbjct 136007 ACCAAGATAGAATGTATCTACGTTCTTGTGCCTCCCCATAGCGAAGTAACTGCGGATATT 136066 Query 7452 ATCCTGTTTTTCACAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATCTTC 7511 | | || ||||| ||||| | ||||||||| |||||||| ||||| |||||| || || Sbjct 136067 ACCGTGCTTTTCGCAAGCTATATCGTCAAAAATCATCAAAGAGTTTTCCTTAGCCTCGTC 136126 Query 7512 AGGCTTGATTAC-----AGCTTCATGTTCGCTGAATGTGAAGAATCCAATACCATCAATC 7566 || || || || |||| ||| | ||||| | || | | || || Sbjct 136127 CGGTTTAATGACCAGGGAGCT-----ATCGTCATACGTGAAATACCCGA---CTTCCTTC 136178 Query 7567 TGTTTAAGCAGTGTCTCCAGGAACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAAAGA 7626 || | || | | |||| || |||||||||||||||| | |||||||| | | Sbjct 136179 GGT---ATCATTTTAGCCAGTAATTGATACTTTGGTTGGTACAATGACTTTGAAAATACG 136235 Query 7627 TATATATTCTCAAACCTCAAACCGTTTGGAT 7657 || | |||||| || | || ||||| |||| Sbjct 136236 TACACATTCTCGAATCGTAATCCGTTCGGAT 136266 >seq3448 Length=131995 Score = 96.9 bits (106), Expect = 7e-16 Identities = 175/249 (70%), Gaps = 9/249 (4%) Strand=Plus/Minus Query 7272 CATGTCCGTATTGACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAA 7331 ||| || ||||||||||||||| ||| || | || ||||| |||| || ||| Sbjct 38065 CATATCAGTATTGACATGATCACTGTAAGCGTGGTGTAGGTTCATATCATTCTGTTTGAA 38006 Query 7332 CAGCACGAGAAAGTTTGCA--TTATCTCTAATCAGGTGCTTGGGTATTCGTG--TATAAG 7387 || | | ||| |||||| |||||||||| ||| || || |||| |||| | || | Sbjct 38005 GAGTATTATAAAATTTGCATTTTATCTCTAACCAGCTGTTTCGGTA--CGTGACTGTAGG 37948 Query 7388 TTTGACAGAGATAGAAGCTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTG- 7446 |||||| ||||||||| | || || | |||||| | ||||| ||| || || | Sbjct 37947 TTTGACCGAGATAGAATGTATCTACGTTCTTGTGCCTCCCCATAGCGAAGTAA-CTGCGT 37889 Query 7447 ATGTGATCCTGTTTTTCACAAGCAACATCGT-CAAATATCATCAAGGAGTTAGGCTTAGC 7505 || | | | || ||||| ||||| | ||||| ||| |||||||| |||| |||||| Sbjct 37888 ATATTACCGTGCTTTTCGCAAGCTATATCGTAAAAAAATCATCAAAAAGTTTTCCTTAGC 37829 Query 7506 ATCTTCAGG 7514 || || || Sbjct 37828 CTCGTCCGG 37820 >seq3242 Length=134958 Score = 96.9 bits (106), Expect = 7e-16 Identities = 169/245 (69%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 7965 TTGAACTTCACATACC---AGGTTATCAGTACTGCGGTCCGGGTACAAAGTTAGCCAAGA 8021 ||||| | || |||| || ||||||||||||||| || |||||| | ||| | || Sbjct 79720 TTGAATTACATTTACCTAGAGCTTATCAGTACTGCGGCCCTGGTACAGATTTAAAAACGA 79779 Query 8022 GATTAGCTCGAGGTGATTCAGGTATAAATCCTTTGGACGCTGCGTGTAAGGAACACGATA 8081 ||||| | || ||| |||| || || ||| ||||| || | ||||||||| |||| Sbjct 79780 GATTAAGTAGAAACGATCCAGGAATTAACGGTTTAGACGCAGCTTATAAGGAACATGATA 79839 Query 8082 TAGCTTACTCAAAAAATCGTGAAAATTTGGAAGCTCGTCACGAGGCTGATAAAATTCTTG 8141 |||| ||||||||| ||| || || || | || || || | ||| | | Sbjct 79840 TAGCGTACTCAAAATATC---AAGATACTAAACAAAGAGCAGATGCAGACAGAATATTGG 79896 Query 8142 CTGAGAAAGCGTGGCAACGATTTCAAGCGAGAGACGCTGCTATTGGTGAAAAAGCTGCTG 8201 |||| ||||| ||| | ||||| |||| ||| | | | |||||||||||||| | Sbjct 79897 CTGAAAAAGCTTGGAATAGATTTAAAGCATCAGATTCAAGTTTAGGTGAAAAAGCTGCAG 79956 Query 8202 CTTGG 8206 | ||| Sbjct 79957 CGTGG 79961 Score = 93.3 bits (102), Expect = 8e-15 Identities = 243/364 (67%), Gaps = 10/364 (3%) Strand=Plus/Minus Query 7282 TTGACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGA 7341 || |||||||||| |||||||| | || ||| |||||||| ||| | || | | Sbjct 77380 TTTACATGATCATGGTAAATATGTTGCAAGTTCCGATCATCTTGTTTGAAAACAACTATA 77321 Query 7342 AAGTTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAG 7401 || || |||||||| | | || || || || || | || |||||||| | ||| Sbjct 77320 AAATTAGCATTATCACGTACCAACTGTTTTGGAATATAACTGTACGTTTGACAAATATAA 77261 Query 7402 AAGCTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTTTT 7461 || | |||||| | || |||| |||||| |||| || ||| || | | ||||| Sbjct 77260 AACGTATCAACAGCATTATGTCTTCCCATGGAGAAGTAATTTTTTATATTACTTTGTTTA 77201 Query 7462 TCACAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATCTTCAGGCTTGATT 7521 ||||||| ||||| ||||| ||||| | || || || || || ||||| ||| | Sbjct 77200 CCACAAGCTACATCATCAAAAATCATTATAGAATTTGGTTT--CA-CTTCAA--TTGGGT 77146 Query 7522 ACAG--CTTCAT-GTTCGCTGAATGTGAAGA--ATCCAATACCATCAATCTGTTTAAGCA 7576 | |||||| ||| ||||| ||| | ||||||| || || | ||| | || Sbjct 77145 GTGGGACTTCATCGTTGTCTGAAAACGAAAAGTATCCAATCTCAGGAAGTTTTTTTAACA 77086 Query 7577 GTGTCTCCAGGAACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAAAGATATATATTCT 7636 |||| |||| |||||||| || | | || || ||| | | ||| ||||||| Sbjct 77085 CACATTCCAAAAACTCATACTTTGACTGATACAATGATTTCGAGAATATATAAATATTCT 77026 Query 7637 CAAA 7640 |||| Sbjct 77025 CAAA 77022 >seq9565 Length=43341 Score = 95.1 bits (104), Expect = 2e-15 Identities = 267/404 (66%), Gaps = 16/404 (4%) Strand=Plus/Plus Query 7312 TTCATTTCATCTTGACGGAACAGCACGAGAAAGTTTGCATTATCTCTAATCAGGTGCTTG 7371 || || || ||||| ||||| || | ||||| ||||| || |||| || || || Sbjct 30693 TTTATGTCGTCTTGTTTAAACAGTACTATCAAGTTGGCATTGTCCCTAAAAAGCTGTTTA 30752 Query 7372 GGTATTCGTGTATAAGTTTGACAGAGATAGAAGCTGTCAACATCCTTGTGTCGACCCATG 7431 |||||| | || || ||||| | ||| || || |||| || | |||||||| ||||| Sbjct 30753 GGTATTTGCGTGTACGTTTGCCTGAGTTAAAATTTGTCTACTTTCTTGTGTCTGCCCATA 30812 Query 7432 CAGAAAAAAGCTTTGATGTGATCCTGTTTTTCACAAGCAACATCGTCAAATATCATCAAG 7491 ||| | ||||| ||| |||||||||||||| | ||||| || ||||| | Sbjct 30813 GTGAAGTAGTTGCGGATGTTATCGTGTTTTTCACAAGCTATATCGTAAAGAATCATTACA 30872 Query 7492 GAGTTAGGCTTAGCATCTTCAGGCTTGATTACAGCTTCATGTTCGC-TGAATGTGAAGAA 7550 ||||| ||| || || || | ||| || | | | |||| | | || | || Sbjct 30873 GAGTT-TTCTTGGCCTCGTCCGTCTTAATGGC--CATAGTGTTATCGTCAAAGGCAA--- 30926 Query 7551 TCCAATACCATCAATCTGTTTAAGCAGTGTCT---CCAGGAACTGATACTTTGGTTGGTT 7607 |||||| | | | ||| ||| | || ||| | | || |||| || | Sbjct 30927 ---AATACC--CGACTTCTTTCGGCATTACCTTTGACAGTAGTTTGAACGTTGGCTGATA 30981 Query 7608 AAGAGACTTTGAGTAAAGATATATATTCTCAAACCTCAAACCGTTTGGATGTACAATAAG 7667 ||||||||||| ||| || | |||||| ||||| || |||||||| | || || || Sbjct 30982 CAGAGACTTTGAAAAAACGTACACATTCTCGAACCTTAATCCGTTTGGGTTTATAAGCAG 31041 Query 7668 AGACAGCAGAGCATTCGTCTTTCCACAGTTTGA-TGGCCCGCAA 7710 | | || |||| || || ||||||||||| ||||| ||| Sbjct 31042 ATTGAATAGTACATTTGTTTTACCACAGTTTGAGGGGCCCACAA 31085 >seq733 Length=543368 Score = 84.2 bits (92), Expect = 4e-12 Identities = 172/253 (68%), Gaps = 7/253 (3%) Strand=Plus/Minus Query 7982 GGTTATCAGTACTGCGGTCCGGGTACAAAGTTAGCCAAGAGATTAGCTCGAGGTGATTCA 8041 |||||||||||||| || || |||||| | || ||||||||| | || ||| || Sbjct 60319 GGTTATCAGTACTGAGGCCCTGGTACAGATGTACAAAAGAGATTAAGTAGAAACGATCCA 60260 Query 8042 GGTATAAATCCTTTGGACGCTGCGTGTAAGGAACACGATATAGCTTACTCAAAAAATCGT 8101 || || || ||| |||| | | ||||||||||| |||||||| ||||||||| ||| Sbjct 60259 GGAATTAACGGTTTAGACG-TCCTTGTAAGGAACATGATATAGCATACTCAAAATATCAA 60201 Query 8102 GAAAATT-TGGAAGCTCGTCACGAGGCTGATAAAATTCTTGCTGAGAAAGCGTGGCAACG 8160 || | || | ||| | | |||| | ||| | ||||| || || ||| | Sbjct 60200 GATACTTATCAAAG-----AGCAAAACTGACATAATCTTAGCTGAAAAGGCTTGGAATAA 60146 Query 8161 ATTTCAAGCGAGAGACGCTGCTATTGGTGAAAAAGCTGCTGCTTGGAGTGTAAATAAAAT 8220 ||| |||| ||| | | | ||||||||||||| || ||| |||| || || Sbjct 60145 GTTTAAAGCATCAGATTCAAGTTTAAGTGAAAAAGCTGCAGCGTGGGCAGTAACAAATAT 60086 Query 8221 CATGAAGTTAAAA 8233 ||||| | |||| Sbjct 60085 TATGAAATCAAAA 60073 >seq4770 Length=38483 Score = 82.4 bits (90), Expect = 1e-11 Identities = 102/138 (74%), Gaps = 4/138 (3%) Strand=Plus/Minus Query 7965 TTGAACTTCACATACC---AGGTTATCAGTACTGCGGTCCGGGTACAAAGTTAGCCAAGA 8021 ||||| | || |||| |||||||||||| |||| || |||||| | ||| |||| Sbjct 25076 TTGAATTACATTTACCTGGAGGTTATCAGTAAAGCGG-CCTGGTACAGATTTACAAAAGA 25018 Query 8022 GATTAGCTCGAGGTGATTCAGGTATAAATCCTTTGGACGCTGCGTGTAAGGAACACGATA 8081 ||||| | | ||| |||| || || ||| ||||| || ||||||||||| |||| Sbjct 25017 GATTAAGTATAAACGATCCAGGAATTAACGGTTTAGACGCAGCTTGTAAGGAACATGATA 24958 Query 8082 TAGCTTACTCAAAAAATC 8099 |||| |||| |||| ||| Sbjct 24957 TAGCGTACTTAAAATATC 24940 Score = 82.4 bits (90), Expect = 1e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 6184 AGCTCTTCAATAATTGACATGATTTCATTCGTGTGACTTGGGTTTCCAGCAGCTTGAGAT 6243 || |||||||| ||||| |||||||||| | || | || ||| || || ||||||| Sbjct 26038 AGTTCTTCAATGATTGAGTTGATTTCATTTGAATGGCCTGTGTTCCCTGCTTGTTGAGAT 26097 Query 6244 GCCATCAGTAGTCGCAAACGATCAACTAGCTCATTTGGATCATCCCAGTAAACATAAT 6301 || | | || | ||| ||||| || || |||||||||||||| | |||||||||| Sbjct 26098 GCTAATAATAACCTCAATCGATCTACAAGTTCATTTGGATCATCAAAATAAACATAAT 26155 >seq2730 Length=148179 Score = 80.6 bits (88), Expect = 5e-11 Identities = 152/221 (69%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 7268 ATGGCATGTCCGTATTGACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGAC 7327 ||| |||||| |||| |||||||||| ||| | ||| | | ||| | |||||||| Sbjct 55415 ATGACATGTCTATATTTACATGATCATTATATACATGGTGTAAATTTTTATCATCTTGTT 55474 Query 7328 GGAACAGCACGAGAAAGTTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAG 7387 || || | | |||||||||||||||| | | || || ||||| |||| | Sbjct 55475 TAAATAGTATTATCAAGTTTGCATTATCTCGTACTAATTGTTTTGGTATAAAACTATATG 55534 Query 7388 TTTGACAGAGATAGAAGCTGTCAACATCCTTGTGTCGACCCA-TGCAGAAAAAAGCTTTG 7446 ||||||| | ||| | |||||| | || || |||| |||| ||| || ||| Sbjct 55535 TTTGACAAATATAATAAGTGTCAATCTTACAATGACGTCCCATTGCA-AAATAATTTTTT 55593 Query 7447 ATGTGATCCTGTTTTTCACAAGCAACATCGTCAAATATCAT 7487 |||| | |||| || ||| |||||||||||| ||||| Sbjct 55594 ATGTTTTTCTGTCCATCGCAAATAACATCGTCAAAAATCAT 55634 >seq2260 Length=121021 Score = 80.6 bits (88), Expect = 5e-11 Identities = 152/221 (69%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 7268 ATGGCATGTCCGTATTGACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGAC 7327 ||| |||||| |||| |||||||||| ||| | ||| | | ||| | |||||||| Sbjct 112297 ATGACATGTCTATATTTACATGATCATTATATACATGGTGTAAATTTTTATCATCTTGTT 112238 Query 7328 GGAACAGCACGAGAAAGTTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAG 7387 || || | | |||||||||||||||| | | || || ||||| |||| | Sbjct 112237 TAAATAGTATTATCAAGTTTGCATTATCTCGTACTAATTGTTTTGGTATAAAACTATATG 112178 Query 7388 TTTGACAGAGATAGAAGCTGTCAACATCCTTGTGTCGACCCAT-GCAGAAAAAAGCTTTG 7446 ||||||| | ||| || |||||| | || || ||||| ||| ||| || ||| Sbjct 112177 TTTGACATATATAAAAAGTGTCAATCTTACAATGACGTCCCATTGCA-AAATAATTTTTT 112119 Query 7447 ATGTGATCCTGTTTTTCACAAGCAACATCGTCAAATATCAT 7487 |||| | ||| || ||| |||||||||||| ||||| Sbjct 112118 ATGTTTTTTTGTCCATCGCAAATAACATCGTCAAAAATCAT 112078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97902999318980