Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq59 89.7 5e-13 >seq59 Length=4169348 Score = 89.7 bits (98), Expect = 5e-13 Identities = 150/212 (71%), Gaps = 10/212 (5%) Strand=Plus/Minus Query 18565 AAATTAATTTAAACCGCTTGATCCAAAACCTCTATTTCCTCTAAACGTATCTTTTAATTC 18624 ||| ||||||| || |||| ||||| ||| || |||||||| ||| ||||||| Sbjct 38633 AAACTAATTTAGTCCTGTTGAGCCAAATCCTTTAGCTCCTCTAACCGTGCAATTTAATTT 38574 Query 18625 --CAA----AACTTCTTCTATAGATGGATTTTCTATACGTTCAAATATTATTTGTGCTAT 18678 ||| || ||| || | |||| ||| |||||| ||||||||||||| || Sbjct 38573 GTCAATTGTAATTTCCTCAACTTCGGGATAGAATATGCGTTCACATATTATTTGTGCAAT 38514 Query 18679 TCTATCACCAGTTTTTATTTCAAATACACAAGTGCTATTATTGATAACAATA--ACACCT 18736 ||| || ||| | |||| || ||| | | | | || | | | ||||||| ||||| Sbjct 38513 TCTGTCCCCAATATTTACTTTAAACTCGGTACT-CGATAAATTA-AACAATAATACACCA 38456 Query 18737 ATATTCCCTCTATAATCTCTATCAATGACACC 18768 ||||| |||||||||||| ||||||| || || Sbjct 38455 ATATTTCCTCTATAATCTTTATCAATAACTCC 38424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531492765598800