Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq254 111 2e-19 seq38 104 3e-17 seq59 102 1e-16 seq316 82.4 1e-10 >seq254 Length=3229631 Score = 111 bits (122), Expect = 2e-19 Identities = 157/218 (72%), Gaps = 11/218 (5%) Strand=Plus/Plus Query 33340 ATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 33399 || ||||| ||| || || ||||||||||| ||||||||||| || ||||| || ||| Sbjct 2115766 ATCAGTTCATTGCTGAAGGTTAGTCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATG 2115825 Query 33400 GAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCT 33459 |||||||| || || |||||||| || || |||||||| || || | || | ||| Sbjct 2115826 GAAGCGAAGCTACCGGAGAAGAAGATACCCTCGACTGCAGCGAACGCTACAATACGCTCA 2115885 Query 33460 CCATAAC----CGG---CGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTT 33512 ||| ||| ||| ||||| | ||||||| |||||||| || || || Sbjct 2115886 CCA-AACGTTGCGGTCTCGCTGGC---GATCCACTGCAATGCCCAATCAGCTTTGCGCTT 2115941 Query 33513 TACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 33550 ||||| ||||| ||||| ||||| || || ||| ||| Sbjct 2115942 GACACAGGGCATTGTTTCGATGGCGTTGAACAGAAAGT 2115979 Score = 82.4 bits (90), Expect = 1e-10 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 33790 TTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTC 33849 ||||| | ||| || || || ||||||| || || ||||||||||| || ||||| ||| Sbjct 2122675 TTAGAGAGATCCACCTCCTCAGCTGTCCAGAACGAGGCCTCTGCCTTCTTGTACATTTTC 2122734 Query 33850 CAGATGTCATAATATTGGATTGGGAAAATAACAAATCT 33887 |||||||||| ||||| || ||||| | || ||||| Sbjct 2122735 CAGATGTCATGATATTCAATAGGGAACACCACGAATCT 2122772 >seq38 Length=3890971 Score = 104 bits (114), Expect = 3e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 80982 TTTCCAGACATTGTTGAATTCTGTGAGCGTATGGCAAACGAAGGAAAAATAGTTATAGTA 81041 |||||||||| ||| || || |||||||| ||||| ||| ||||| || ||| | || Sbjct 2747231 TTTCCAGACACTGTAGACTTTTGTGAGCGGATGGCCAACAGTGGAAAGATTGTTGTGGTG 2747172 Query 81042 GCCGCACTCGATGGGACATTTCAACGTAAACCGTTTAATAATATTTTGAATCTTATTCCA 81101 || ||||| |||||||| | || || || || ||||| |||| || | || Sbjct 2747171 GCAGCACTGGATGGGACGTACCAGCGGCAAGGCTTCGGGAATATCCTGAACCTGGTGCCT 2747112 Query 81102 TTATCTGAAATGGTGGTAAAACTAACTGCTGTGTGTATGAAATGCTTTAAGGAGGCTTCC 81161 || |||| | || | ||||| || |||||||||||| |||||| || ||||| ||| Sbjct 2747111 CTAGCTGAGAACGTTATCAAACTTACCGCTGTGTGTATGTCATGCTTCAATGAGGCGTCC 2747052 Query 81162 TTTTCTAAACGATTGGG 81178 || | || ||||| || Sbjct 2747051 TTCACCAAGCGATTAGG 2747035 >seq59 Length=4169348 Score = 102 bits (112), Expect = 1e-16 Identities = 185/266 (70%), Gaps = 15/266 (6%) Strand=Plus/Minus Query 31045 AGTCCTGTTGATCCAAACCCTTGATCTCCTCTATTTGTACTATCTA-----GAGATTGT- 31098 ||||||||||| ||||| |||| | |||||||| || | || || ||||| Sbjct 38623 AGTCCTGTTGAGCCAAATCCTTTAGCTCCTCTAACCGTGCAATTTAATTTGTCAATTGTA 38564 Query 31099 ACTTCTTCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCA 31158 | ||| || | ||| ||||| |||| |||| | | |||| || || ||||| || ||| Sbjct 38563 ATTTCCTCAACTTCGGGATAGAATATGCGTTCACATATTATTTGTGCAATTCTGTCCCCA 38504 Query 31159 GTATTTACATTAAAC---GTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCC 31215 ||||||| |||||| |||| | |||| || || ||| || || || ||||| Sbjct 38503 ATATTTACTTTAAACTCGGTACTCGATAAATTA--AACAATAAT-ACACCAATATTTCCT 38447 Query 31216 CTATAATCTTCGTCTATTACACCGCCTCCTATATCAATGCC---TTTTAGGGACAGACCA 31272 |||||||||| || || || ||| |||||| | ||| || ||||| || | || Sbjct 38446 CTATAATCTTTATCAATAACTCCGGCTCCTACGTGAATCCCATATTTTAATGATAACCCT 38387 Query 31273 GACCTAGGAGCTATTCTACCATAGCA 31298 || || || ||||| | |||||||| Sbjct 38386 GATCTGGGCGCTATCCGTCCATAGCA 38361 >seq316 Length=1680448 Score = 82.4 bits (90), Expect = 1e-10 Identities = 146/210 (70%), Gaps = 11/210 (5%) Strand=Plus/Plus Query 31045 AGTCCTGTTGATCCAAACCCTTGATCTCCTCTATTTGTAC-----TATCTAGAGATTGTA 31099 ||||||||||||||||| |||| |||||||| ||| | || | |||||| Sbjct 1398030 AGTCCTGTTGATCCAAATCCTTTCGCTCCTCTAACTGTGCATTTTAATTTGTCAATTGTA 1398089 Query 31100 CTTCTTCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCAG 31159 || || ||| ||||| |||| |||| | | ||||| || || ||||| || ||| Sbjct 1398090 ATTTCCTCAATTCAGGATAGAATATGCGTTCACATATTAGTTGTGCAATTCTGTCCCCAA 1398149 Query 31160 TATTTACATTAAAC---GTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCC 31216 ||||||| |||||| |||| | |||| || || ||| || || || || || | Sbjct 1398150 TATTTACTTTAAACTCGGTACTCGATAAATTA--AACAATAAT-ACACCAATATTGCCTC 1398206 Query 31217 TATAATCTTCGTCTATTACACCGCCTCCTA 31246 |||||||| || || ||||| |||||| Sbjct 1398207 AATAATCTTTATCAATAACACCAGCTCCTA 1398236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622469321629200