Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq907 87.8 5e-12 >seq907 Length=523837 Score = 87.8 bits (96), Expect = 5e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 364126 TTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCG 364185 || |||||| |||| | ||| | ||||| || || || ||||| || || ||| | Sbjct 396271 TTCGCCATCCTGGACGCCCAGGTAGAGACTGGTGTTCCGTACATGTTATATAAGGATGCC 396330 Query 364186 TGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACC 364245 |||||||||||| ||| |||||| ||||||| || || || |||||||| || || Sbjct 396331 TGCAACCGCAAGAGCAATCAGCAGAACCTTGGGACCATCAAGTGCAGCAACCTCTGCACA 396390 Query 364246 GAGATTATTGAATACACC 364263 |||||| | || |||||| Sbjct 396391 GAGATTGTCGAGTACACC 396408 Score = 87.8 bits (96), Expect = 5e-12 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 364720 AAGCATGGTACTCGCAACTCCCTCGTTACAG-CGCCCATGCCCACGGCTTCTACTGCACA 364778 ||||||||| || ||||| | ||||| | | ||||||||||| || ||||| ||||| Sbjct 405276 AAGCATGGTGTACGAAACTCGTT-GTTACTGGCTCCCATGCCCACTGCATCTACCGCACA 405334 Query 364779 GATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGT 364838 ||| || || || ||||||| |||||| || | || || || | |||||||| || || Sbjct 405335 GATTCTTGGCAATAACGAGTCCTTCGAGCCTTACACTAGTAACATCTATTCACGACGAGT 405394 Query 364839 TCTTTCCGGAGAATTTCCGGTA 364860 || || || || || | |||| Sbjct 405395 GCTCTCAGGCGAGTTCCAGGTA 405416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302328768991340