Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq154 122 8e-23 seq907 102 8e-17 seq1481 93.3 4e-14 >seq154 Length=1683969 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| ||||| || || || | |||||||||||| || |||||||| || Sbjct 579795 CCTCCTCGCAGTCGCAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAG 579736 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || || ||||| || || ||| |||| | ||||||||||| ||||| Sbjct 579735 AGGGTACGGCCATCTTCCAGCTGTTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGA 579676 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| || || ||| || ||| | | ||| | |||||||| | ||| | Sbjct 579675 ATTCCTTCCTTATCTTGGATCTTGGCCTTAACATTCTCAATAGTATCGGATGGCTCAACT 579616 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | |||||| || || || ||||| ||||| |||||||| Sbjct 579615 TCCAAGGTGATGGTTTTTCCTGTAAGGGTTTTCACGAAGATCTGCAT 579569 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 ||||| || || || | ||| ||||| || || |||||||| || || || || Sbjct 579046 CGCAGGACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGGCCA 578987 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || |||||||| || ||| |||| | ||||||||||| ||||| |||||||| || Sbjct 578986 TCTTCCAGCTGCTTTCCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGAATTCCTTCCTTA 578927 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||| | | ||| | |||||| | | ||| | || | ||| | | Sbjct 578926 TCTTGGATCTTGGCCTTAACATTCTCAATAGTATCAGATGGCTCAACTTCCAAGGTGATG 578867 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||||| || || || ||||| ||||| |||||||| Sbjct 578866 GTTTTTCCTGTAAGGGTTTTCACGAAGATCTGCAT 578832 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 ||||| || || || | ||| ||||| || || |||||||| || || ||| || Sbjct 580011 CGCAGGACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCA 579952 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || || ||||| || ||| |||| | ||||||||||| ||||| |||||||| || Sbjct 579951 TCTTCCAGTTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGAATTCCTTCCTTA 579892 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||||| ||||| | ||| | ||||| | | ||| | || | || | | Sbjct 579891 TCTTGAATTTTGGCCTTGACATTCTCAATGGTATCAGATGGCTCAACTTCCAAAGTGATG 579832 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||||||||||| | || || |||||||||||||| Sbjct 579831 GTTTTACCGGTCAATGTCTTCACGAAAATCTGCAT 579797 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || |||||||| | || || ||||| || |||||||| || Sbjct 580479 CCACCACGAAGGCGAAGGACTAAATGAAGTGTAGATTCCTTCTGGATGTTGTAGTCCGAA 580420 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| |||||||| || ||| |||| | ||||||||||| ||||| Sbjct 580419 AGGGTTCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATAAGTCGCTGCTGGTCTGGAGGA 580360 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| || || | ||| ||||| | || | ||||| | | ||| | Sbjct 580359 ATTCCTTCCTTATCTTGAACTTTAGCCTTGACATTTTCAATGGTATCAGATGGCTCAACC 580300 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| || || || ||||| || || |||||||||||||| Sbjct 580299 TCCAAGGTAATTGTCTTTCCTGTTAGGGTCTTCACGAAAATCTGCAT 580253 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 ||||| || || || | ||| |||||||| || || ||||| ||| | ||| || Sbjct 578818 CGCAGGACCAAGTGGAGGGTTGACTCCTTCTGGATATTGTAGTCGGAGAGGGTACGGCCA 578759 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || |||||||| || ||| |||| | ||||||||||| || || ||||||||||| Sbjct 578758 TCTTCCAGCTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGGGGAATTCCTTCTTTA 578699 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || |||||| || | | ||| | ||||| | | ||| | || | || | | Sbjct 578698 TCTTGGATTTTGGCTTTTACGTTCTCGATGGTATCAGAAGGCTCAACTTCCAATGTGATG 578639 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || ||||| || || |||||||||||||| Sbjct 578638 GTCTTTCCTGTTAGGGTCTTCACGAAAATCTGCAT 578604 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| ||||| || || || | ||| |||||||| || |||||||| || Sbjct 580251 CCTCCTCGCAGTCGCAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAG 580192 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || || |||||||| || ||| |||| | |||||||| || || || Sbjct 580191 AGGGTACGGCCATCTTCCAGCTGCTTTCCAGCGAAGATAAGTCGCTGCTGATCTGGGGGA 580132 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| || || || || ||||| | ||| | ||||||| | ||| | Sbjct 580131 ATTCCTTCCTTATCTTGAATCTTAGCCTTGACATTCTCAATGGTATCGGATGGCTCAACT 580072 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | |||||||||||| | || || ||||| |||||||| Sbjct 580071 TCCAAAGTGATGGTTTTACCGGTCAATGTCTTCACGAAGATCTGCAT 580025 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 ||||| || || || | ||| |||||||| || |||||||| ||| | ||| || Sbjct 578590 CGCAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCA 578531 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || || ||||| || ||| |||| | ||||||||||| ||||| |||||||| || Sbjct 578530 TCTTCCAGTTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGAATTCCTTCCTTA 578471 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || || || ||||| | ||| | ||||||| | ||| | || | || | Sbjct 578470 TCTTGAATCTTAGCCTTGACATTCTCAATGGTATCGGATGGCTCAACTTCTAAAGTGATA 578411 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||||||| || | || || ||||| |||||||| Sbjct 578410 GTTTTACCAGTCAATGTCTTCACGAAGATCTGCAT 578376 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 ||||| || || || | ||| |||||||| || |||||||| ||| | ||| || Sbjct 578362 CGCAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCA 578303 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 || || |||||||| || ||| |||| | ||||||||||| ||||| |||||||| || Sbjct 578302 TCTTCCAGCTGCTTTCCAGCGAAGATAAGTCGCTGCTGGTCTGGAGGAATTCCTTCCTT 578244 >seq907 Length=523837 Score = 102 bits (112), Expect = 8e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 145064 ACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGTTCAAAA 145123 ||||| |||||||| | | ||| || || |||| | |||| ||| | || || || Sbjct 405415 ACCTGGAACTCGCCTGAGAGCACTCGTCGTGAATAGATGTTACTAGTGTAAGGCTCGAAG 405356 Query 145124 GACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACCAATAAT 145183 |||||||||||||| || || || ||||| | ||| ||||||||| |||| || || Sbjct 405355 GACTCGTTATTGCCAAGAATCTGTGCGGTAGATGCAGTGGGCATGGGAGCCAGTAACAAC 405296 Query 145184 GAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCATAGCGAA 145243 || || || | || ||||| ||| | |||| || | | |||| ||||| || Sbjct 405295 GAGTTTCGTACACCATGCTTTGCGATCTTAGCCTTGAGAGCAGCCCAGTCCCACAGGTCG 405236 Query 145244 GTCGGCCTCACGTCCCACATGTCGTACTGCA 145274 || || |||| |||||||||| ||||||| Sbjct 405235 GTGGGTGTCACTCCCCACATGTCATACTGCA 405205 >seq1481 Length=432034 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || ||||||||| | || | || ||||||||||||||||||||||| Sbjct 222096 CCACCTCTCAGACGCAGCACAAGGTGAAGTGTGGACTCCTTTTGAATGTTGTAATCAGAA 222155 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || | ||| || ||||| | || || | ||||||||| || ||| Sbjct 222156 AGTGTGCGACCATCTTCCAACTGTTTTCCTGCAAAAATCAATCTCTGCTGGTCTGGGGGG 222215 Query 131128 ATTCCTTCTTTGTC 131141 |||||||||||||| Sbjct 222216 ATTCCTTCTTTGTC 222229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471650707180800