Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq254 91.5 2e-13 seq316 87.8 2e-12 >seq254 Length=3229631 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 33147 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 33206 ||||| | |||||| || || ||||||| || || ||||||||||| || ||||| ||| Sbjct 2122675 TTAGAGAGATCCACCTCCTCAGCTGTCCAGAACGAGGCCTCTGCCTTCTTGTACATTTTC 2122734 Query 33207 CAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 33244 |||||||||||||||| ||| || || | || ||||| Sbjct 2122735 CAGATGTCATGATATTCAATAGGGAACACCACGAATCT 2122772 Score = 84.2 bits (92), Expect = 3e-11 Identities = 142/203 (70%), Gaps = 11/203 (5%) Strand=Plus/Plus Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 32771 || || ||||||||||| ||||||||||| || ||||| || ||||| || || || Sbjct 2115781 AAGGTTAGTCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCGAAGCTACCG 2115840 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC----CGG- 32826 || ||||| || || || ||||| || || || | || | ||| ||| ||| ||| Sbjct 2115841 GAGAAGAAGATACCCTCGACTGCAGCGAACGCTACAATACGCTCACCA-AACGTTGCGGT 2115899 Query 32827 --CGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGT 32884 ||||| | ||||||| |||||||| || || || ||||| |||||||| Sbjct 2115900 CTCGCTGGC---GATCCACTGCAATGCCCAATCAGCTTTGCGCTTGACACAGGGCATTGT 2115956 Query 32885 CTCTATAGCATTAAAGAGATAGT 32907 || || || || || ||| ||| Sbjct 2115957 TTCGATGGCGTTGAACAGAAAGT 2115979 >seq316 Length=1680448 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 11/210 (5%) Strand=Plus/Plus Query 30402 AGTCCGGTTGATCCAAACCCTTGATCTCCTCTATCTGTACTATCTAGAT-----ATTGTA 30456 ||||| ||||||||||| |||| |||||||| |||| | | || | |||||| Sbjct 1398030 AGTCCTGTTGATCCAAATCCTTTCGCTCCTCTAACTGTGCATTTTAATTTGTCAATTGTA 1398089 Query 30457 CTTCTTTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCCG 30516 || ||| ||| ||||| |||| |||| | | ||||| || || ||||| ||||| Sbjct 1398090 ATTTCCTCAATTCAGGATAGAATATGCGTTCACATATTAGTTGTGCAATTCTGTCCCCAA 1398149 Query 30517 TATTTACATTGAA---TGTACATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCC 30573 ||||||| || || |||| | |||| || || ||| || || ||||| || | Sbjct 1398150 TATTTACTTTAAACTCGGTACTCGATAAATTA--AACAATAAT-ACACCAATATTGCCTC 1398206 Query 30574 TATAATCTTCGTCTATTACACCGCCTCCTA 30603 |||||||| || || ||||| |||||| Sbjct 1398207 AATAATCTTTATCAATAACACCAGCTCCTA 1398236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633145925052000