Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq154 120 3e-22 seq1481 116 3e-21 seq1475 96.9 3e-15 >seq154 Length=1683969 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||||||||||| ||||||| | ||||| ||| | ||| Sbjct 579797 ATGCAGATTTTCGTGAAGACATTGACCGGTAAAACCATCACTTTGGAAGTTGAGCCATCT 579856 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || ||| | || || |||| ||| || || ||||| ||||| || ||||| Sbjct 579857 GATACCATTGAGAATGTCAAGGCCAAAATTCA-AGATAAGGAAGGAATTCCTCCAGACCA 579915 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || || || || || ||| | ||||||| || || || || ||||| Sbjct 579916 GCAGCGACTCATCTTCGCTGGTAAGCAACTGGAAGATGGCCGTACCCTGTCTGACTACAA 579975 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||| ||||| || || || || || | ||| ||||||| Sbjct 579976 CATCCAGAAAGAGTCCACCCTCCACTTGGTCCTGCGACTACGAGGAGG 580023 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||||||||||| ||||||| | ||||| ||| | || Sbjct 580025 ATGCAGATCTTCGTGAAGACATTGACCGGTAAAACCATCACTTTGGAAGTTGAGCCATCC 580084 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || ||| | || || || | ||| || || ||||| ||||| || || || Sbjct 580085 GATACCATTGAGAATGTCAAGGCTAAGATTCA-AGATAAGGAAGGAATTCCCCCAGATCA 580143 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| |||| || || || || || | ||||||| || || | || ||||| Sbjct 580144 GCAGCGACTTATCTTCGCTGGAAAGCAGCTGGAAGATGGCCGTACCCTCTCTGACTACAA 580203 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || || || || || || || || | || ||||||| Sbjct 580204 CATCCAGAAGGAGTCAACCCTCCACTTGGTCCTGCGACTGCGAGGAGG 580251 >seq1481 Length=432034 Score = 116 bits (128), Expect = 3e-21 Identities = 142/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||||||||| | || || ||| | || || | || || ||| | ||| Sbjct 233954 ATGCAGATTTTTGTAAAGACGCTCACAGGAAAAACGATTACGTTGGAGGTAGAGCCCTCT 233895 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| |||||| | ||| | || | ||| ||||| ||||||||||| ||||| || Sbjct 233894 GACACGATCGAGAATGTTAAGGCGAAGATTCAA-GACAAGGAAGGGATTCCTCCTGATCA 233836 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || |||||||| || || |||||||||| || || || || ||||| Sbjct 233835 GCAGCGCCTGATCTTTGCCGGGAAGCAGTTAGAAGATGGCCGAACGTTGTCGGACTACAA 233776 Query 25178 TATTCAAAAAG 25188 ||||||||||| Sbjct 233775 TATTCAAAAAG 233765 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||||||||| || || || ||||| ||| | | |||||||| || ||||| || ||| Sbjct 222229 GACAAAGAAGGAATCCCCCCAGACCAGCAGAGATTGATTTTTGCAGGAAAACAGTTGGAA 222170 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| |||||| | |||||||| |||||||| || ||||| || || | ||||| Sbjct 222169 GATGGTCGCACACTTTCTGATTACAACATTCAAAAGGAGTCCACACTTCACCTTGTGCTG 222110 Query 25212 AGGCTAAGAGGAGG 25225 | || ||||| || Sbjct 222109 CGTCTGAGAGGTGG 222096 >seq1475 Length=480095 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/194 (72%), Gaps = 8/194 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || | || |||||| |||| || | || || ||| | || Sbjct 62842 ATGCAAATTTTTGTGAAAACCCTCACGGGTAAAACCATTACCCTTGAGGTCGAGCCATCA 62783 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||||| || |||| | ||||| | || || || || || || || || || Sbjct 62782 GACACTATTGAAAATGTCA---AGGCAAAGATACAG-GATAAGGAGGGAATCCCCCCAGA 62727 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | ||||||||||| ||||| |||||||||| || ||| | || || Sbjct 62726 CCAGCAGCGACTGATTTTTGCCGGTAAACAGTTAGAAGATGGGCGTACTCTCTCTGACTA 62667 Query 25175 CAATATTCAAAAAG 25188 |||||| || |||| Sbjct 62666 CAATATACAGAAAG 62653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433003893676550