Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq254 141 1e-28 seq3005 132 5e-26 seq2377 132 5e-26 seq160 131 2e-25 seq36211 87.8 2e-12 seq19662 86.0 7e-12 >seq254 Length=3229631 Score = 141 bits (156), Expect = 1e-28 Identities = 164/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 93116 TCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTG 93175 ||||| ||||| |||| ||||||||||| |||| || || | || || || |||||| Sbjct 2115754 TCGTCACGTGAGATCAGTTCATTGCTGAAGGTTAGTCCGGGCATGAGGCCACGCTTCTTG 2115813 Query 93176 AGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCC 93235 ||||| || || ||||| || ||||| || || || ||||| || || || || || || Sbjct 2115814 AGCCAGAAGATGGAAGCGAAGCTACCGGAGAAGAAGATACCCTCGACTGCAGCGAACGCT 2115873 Query 93236 ACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCT 93295 |||||||| || |||| |||||| | ||| |||||| | || |||||||| ||| Sbjct 2115874 ACAATACGCTCACCAAACGTTGCGGTCTCGCTGGCGATCCACTGCAATGCCCAATCAGCT 2115933 Query 93296 TTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG 93336 || ||| | ||| || | ||||||||| ||||| || || Sbjct 2115934 TTGCGCTTGACACAGGGCATTGTTTCGATGGCGTTGAACAG 2115974 Score = 87.8 bits (96), Expect = 2e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 93360 GTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTT 93419 ||||||| || || || | ||| |||||||| || |||| ||||||||||| || | Sbjct 2116205 GTATGTAGGTGTCAATCAGCAGGCTGTACATTTCTGAGTGGATGTTCTCCATTGCGATCT 2116264 Query 93420 GGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 |||| || |||||||| | ||||||||| | ||| |||||||| Sbjct 2116265 GGAAGCCATAGAAACACCGAGCTTCCGTCACCTGGACTTCTTG 2116307 >seq3005 Length=42049 Score = 132 bits (146), Expect = 5e-26 Identities = 81/85 (95%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||| Sbjct 19032 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGGTTGGGAGC 19091 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||| Sbjct 19092 GTGGGTTCGAACCCCACACCTGACA 19116 >seq2377 Length=175441 Score = 132 bits (146), Expect = 5e-26 Identities = 81/85 (95%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||| Sbjct 47937 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAATTGGGAGC 47996 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||| Sbjct 47997 GTGGGTTCGAACCCCACACCTGACA 48021 >seq160 Length=2928927 Score = 131 bits (144), Expect = 2e-25 Identities = 80/84 (95%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TCGGGAGCG 126323 ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 571484 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAGTGGGAGCG 571543 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 |||||||||||||||||||||||| Sbjct 571544 TGGGTTCGAACCCCACACCTGACA 571567 >seq36211 Length=1600 Score = 87.8 bits (96), Expect = 2e-12 Identities = 56/60 (93%), Gaps = 2/60 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||| Sbjct 1541 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGGTTGGGAGC 1600 >seq19662 Length=11271 Score = 86.0 bits (94), Expect = 7e-12 Identities = 49/50 (98%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC 126314 ||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 52 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCC 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556433618158800