Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq154 136 3e-27 seq1481 107 2e-18 seq1475 105 6e-18 >seq154 Length=1683969 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || ||||||||||| ||||| | ||||| || | || Sbjct 580025 ATGCAGATCTTCGTGAAGACATTGACCGGTAAAACCATCACTTTGGAAGTTGAGCCATCC 580084 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || |||| || |||||||| ||||| || ||||| || ||||| Sbjct 580085 GATACCATTGAGAATGTCAAGGCTAAGATTCAAGATAAGGAAGGAATTCCCCCAGATCAG 580144 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || ||||| || || || || ||| | || ||| ||| ||| |||| || |||||| Sbjct 580145 CAGCGACTTATCTTCGCTGGAAAGCAGCTGGAAGATGGCCGTACCCTCTCTGACTACAAC 580204 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || ||| | || || || ||||| |||| |||||| Sbjct 580205 ATCCAGAAGGAGTCAACCCTCCACTTGGTCCTGCGACTGCGAGGAGGT 580252 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || || ||||||||||| ||||| | ||||| || | | Sbjct 579797 ATGCAGATTTTCGTGAAGACATTGACCGGTAAAACCATCACTTTGGAAGTTGAGCCATCT 579856 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || |||| ||||||||||| ||||| || ||||| || || || Sbjct 579857 GATACCATTGAGAATGTCAAGGCCAAAATTCAAGATAAGGAAGGAATTCCTCCAGACCAG 579916 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || || || || | || ||| ||| ||| | || || |||||| Sbjct 579917 CAGCGACTCATCTTCGCTGGTAAGCAACTGGAAGATGGCCGTACCCTGTCTGACTACAAC 579976 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||||| |||||| | || || || ||||| | || |||||| Sbjct 579977 ATCCAGAAAGAGTCCACCCTCCACTTGGTCCTGCGACTACGAGGAGGT 580024 >seq1481 Length=432034 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| |||||||| || || | || || |||||| | || | || || || | Sbjct 233958 AAACATGCAGATTTTTGTAAAGACGCTCACAGGAAAAACGATTACGTTGGAGGTAGAGCC 233899 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | | || || | || || | || || |||||||||||||| || ||||| || || Sbjct 233898 CTCTGACACGATCGAGAATGTTAAGGCGAAGATTCAAGACAAGGAAGGGATTCCTCCTGA 233839 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 ||| || || || || |||||||| || |||||||| ||| ||| || | || || || Sbjct 233838 TCAGCAGCGCCTGATCTTTGCCGGGAAGCAGTTAGAAGATGGCCGAACGTTGTCGGACTA 233779 Query 22395 CAACATTCAAAAAG 22408 ||| |||||||||| Sbjct 233778 CAATATTCAAAAAG 233765 >seq1475 Length=480095 Score = 105 bits (116), Expect = 6e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || |||||||||||||| ||||| | || |||||||| | || ||||| || || | Sbjct 62845 AACATGCAAATTTTTGTGAAAACCCTCACGGGTAAAACCATTACCCTTGAGGTCGAGCCA 62786 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | || || |||| ||| || || || |||||||| || || || || Sbjct 62785 TCAGACACTATTGAAAATGTCAAGGCAAAGATACAGGATAAGGAGGGAATCCCCCCAGAC 62726 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || || || |||||||| ||||||||||| ||| || || |||| || ||| Sbjct 62725 CAGCAGCGACTGATTTTTGCCGGTAAACAGTTAGAAGATGGGCGTACTCTCTCTGACTAC 62666 Query 22396 AACATTCAAAAAG 22408 || || || |||| Sbjct 62665 AATATACAGAAAG 62653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419414065754050