Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq154 122 7e-23 seq1481 93.3 4e-14 >seq154 Length=1683969 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || ||||||| || || || || | || || ||||| || |||||||| || Sbjct 580026 ATACCTCCTCGTAGTCGCAGGACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCA 579967 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||||| |||||| ||||| ||||||||| ||||||| ||||| ||||| ||| Sbjct 579966 GACAGGGTACGGCCATCTTCCAGTTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGA 579907 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| || || ||| || || | | |||| ||| || | | || Sbjct 579906 GGAATTCCTTCCTTATCTTGAATTTTGGCCTTGACATTCTCAATGGTATCAGATGGCTCA 579847 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | ||||| ||||||| || || || ||||||||||| Sbjct 579846 ACTTCCAAAGTGATGGTTTTACCGGTCAATGTCTTCACGAAAATCTGCAT 579797 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || |||| || || || || | || || || || || |||||||| || Sbjct 579798 ATACCTCCTCGCAGTCGCAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCA 579739 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| |||||| || |||||||||||| ||||||| ||||| ||||| ||| Sbjct 579738 GAGAGGGTACGGCCATCTTCCAGCTGTTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGA 579679 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| || || ||||| || | | |||| || |||| | || Sbjct 579678 GGAATTCCTTCCTTATCTTGGATCTTGGCCTTAACATTCTCAATAGTATCGGATGGCTCA 579619 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | ||||| || || || ||||| || || |||||||| Sbjct 579618 ACTTCCAAGGTGATGGTTTTTCCTGTAAGGGTTTTCACGAAGATCTGCAT 579569 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | | |||||||| | |||||||| || || |||||||| || Sbjct 580480 ACCACCACGAAGGCGAAGGACTAAATGAAGTGTAGATTCCTTCTGGATGTTGTAGTCCGA 580421 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | || || ||| ||||| || || |||||| |||| || ||||| ||||| ||||| Sbjct 580420 AAGGGTTCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATAAGTCGCTGCTGGTCTGGAGG 580361 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCGA 114333 ||| ||||| || || || |||| | || | | ||||| ||| || | | || | Sbjct 580360 AATTCCTTCCTTATCTTGAA-CTTTAGCCTTGACATTTTCAATGGTATCAGATGGCTCAA 580302 Query 114334 CGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | |||| ||| | || || || || || || || || ||||||||||| Sbjct 580301 CCTCCAAGGTAATTGTCTTTCCTGTTAGGGTCTTCACGAAAATCTGCAT 580253 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || |||| || || || || | || || || || || || ||||| ||| Sbjct 578833 ATACCTCCTCGAAGTCGCAGGACCAAGTGGAGGGTTGACTCCTTCTGGATATTGTAGTCG 578774 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| |||||| || || ||||||||| ||||||| ||||| ||||| || Sbjct 578773 GAGAGGGTACGGCCATCTTCCAGCTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGG 578714 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| |||||||| || || || ||||| | || | ||| || | | || Sbjct 578713 GGAATTCCTTCTTTATCTTGGATTTTGGCTTTTACGTTCTCGATGGTATCAGAAGGCTCA 578654 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || || || || || || || || ||||||||||| Sbjct 578653 ACTTCCAATGTGATGGTCTTTCCTGTTAGGGTCTTCACGAAAATCTGCAT 578604 >seq1481 Length=432034 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 114193 CTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGA 114252 |||||||||| ||||| || || || || |||||| | || || || || ||| Sbjct 233765 CTTTTTGAATATTGTAGTCCGACAACGTTCGGCCATCTTCTAACTGCTTCCCGGCAAAGA 233824 Query 114253 TGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTT 114312 | || ||||| || || |||||||| ||||| ||||| |||||| || | | | Sbjct 233825 TCAGGCGCTGCTGATCAGGAGGAATCCCTTCCTTGTCTTGAATCTTCGCCTTAACATTCT 233884 Query 114313 CAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 114372 | | ||||| | || || || |||| || | |||||| || || || || ||||||| Sbjct 233885 CGATCGTGTCAGAGGGCTCTACCTCCAACGTAATCGTTTTTCCTGTGAGCGTCTTTACAA 233944 Query 114373 AAATCTGCATG 114383 ||||||||||| Sbjct 233945 AAATCTGCATG 233955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419820161788440