Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq112 89.7 4e-13 seq3042 87.8 1e-12 seq261 87.8 1e-12 seq1481 84.2 2e-11 >seq112 Length=2352195 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/100 (82%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGA--GTAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| ||||| || ||| || ||| |||| |||||| Sbjct 1443765 CATGTATTAGCTCTAGAATTACCACAGTTATATAAATAATGGATTGTACGATCCAAGGAA 1443706 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 ||| ||||||| || |||||| || ||||| ||| ||||| Sbjct 1443705 CCATAACTGATTTAATGAGCCTTTTGTGGTTTCGCCTTAA 1443666 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/100 (82%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGA--GTAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| ||||| || ||| || ||| |||| |||||| Sbjct 1443765 CATGTATTAGCTCTAGAATTACCACAGTTATATAAATAATGGATTGTACGATCCAAGGAA 1443706 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 ||| ||||||| || |||||| || ||||| ||| ||||| Sbjct 1443705 CCATAACTGATTTAATGAGCCTTTTGTGGTTTCGCCTTAA 1443666 >seq3042 Length=98925 Score = 87.8 bits (96), Expect = 1e-12 Identities = 81/99 (82%), Gaps = 4/99 (4%) Strand=Plus/Minus Query 115532 ATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGA--GTAAGATCTAAGGAAC 115587 ||||||| |||||||||||||||| ||||||||||||| || ||| |||| ||||||| Sbjct 70429 ATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAATGGATTGTACGATCCAAGGAAC 70370 Query 115588 CAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 || ||||||| || |||| || | ||| ||| ||||| Sbjct 70369 CATAACTGATTTAATGAGTTTTTTGCGGTTTCGCCTTAA 70331 Score = 87.8 bits (96), Expect = 1e-12 Identities = 81/99 (82%), Gaps = 4/99 (4%) Strand=Plus/Minus Query 114335 ATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGA--GTAAGATCTAAGGAAC 114390 ||||||| |||||||||||||||| ||||||||||||| || ||| |||| ||||||| Sbjct 70429 ATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAATGGATTGTACGATCCAAGGAAC 70370 Query 114391 CAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 || ||||||| || |||| || | ||| ||| ||||| Sbjct 70369 CATAACTGATTTAATGAGTTTTTTGCGGTTTCGCCTTAA 70331 >seq261 Length=1587481 Score = 87.8 bits (96), Expect = 1e-12 Identities = 83/101 (82%), Gaps = 5/101 (5%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTA-ACTGA--GTAAGATCTAAGGA 115585 |||||||| |||||||||||||||| |||||||||||| | || ||| |||| |||| Sbjct 28461 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTACAAGGATTGTACGATCGTAGGA 28402 Query 115586 ACCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 |||| ||||||| || |||||| || | ||| ||| ||||| Sbjct 28401 ACCATAACTGATTTAATGAGCCTTTGGCGGTTTCGCCTTAA 28361 Score = 87.8 bits (96), Expect = 1e-12 Identities = 83/101 (82%), Gaps = 5/101 (5%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTA-ACTGA--GTAAGATCTAAGGA 114388 |||||||| |||||||||||||||| |||||||||||| | || ||| |||| |||| Sbjct 28461 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTACAAGGATTGTACGATCGTAGGA 28402 Query 114389 ACCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 |||| ||||||| || |||||| || | ||| ||| ||||| Sbjct 28401 ACCATAACTGATTTAATGAGCCTTTGGCGGTTTCGCCTTAA 28361 >seq1481 Length=432034 Score = 84.2 bits (92), Expect = 2e-11 Identities = 89/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| |||||||| |||||||| || ||||| ||| |||||| |||||||||||||| | Sbjct 222095 ACCACCTCTCAGACGCAGCACAAGGTGAAGTGTGGACTCCTTTTGAATGTTGTAATCAG- 222153 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || ||| || | || ||||| || || || ||||| |||| | |||||| || Sbjct 222154 AAAGTGTGCGACCATCTTCCAACTGTTTTCCTGCAAAAATCAATCTCTGCTGGTC 222208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396765418418740