Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_009603.1 Length=46365 Score E Sequences producing significant alignments: (Bits) Value seq3097 190 6e-44 seq49429 179 1e-40 >seq3097 Length=86150 Score = 190 bits (210), Expect = 6e-44 Identities = 288/410 (70%), Gaps = 0/410 (0%) Strand=Plus/Plus Query 42071 ACGGGGCGCTCGTAGACCGGGCCGTCGACGGCGACCGTGGACGGGTCCACGTCGACGATC 42130 ||||| ||||||||||||||||| ||| || || ||| ||| |||||||||| Sbjct 76181 ACGGGCCGCTCGTAGACCGGGCCCTCGTGCGCCACGGTGCGCGGCGGGACGTCGACGACG 76240 Query 42131 CGCTCTCCCTGCCAGTCGATGACGAGACGGCCGTCGCCGGTGACCTCGCCGAGCACGGAG 42190 ||| || |||||| ||| || || || |||||||||| |||| |||| | Sbjct 76241 GTCTCGCCGTGCCAGGTGATCTGCAGGTTCTCGCCGTCGGTGACCTCACCGATGACGGTG 76300 Query 42191 GTCTCCACCTCCCACTTGCCGGTGACGGCGAGGAACGCGTCGAGCTTCGCAGGCGAGACG 42250 | | || ||||||||| || ||||| | ||||||||||| ||| | |||| ||| Sbjct 76301 GCCAGGACGTCCCACTTGGCGCACACGGCCATGAACGCGTCGACGTTCTCCGGCGTGACC 76360 Query 42251 ATGGCCATCATCCGCTCCTGCGACTCCGACATGAGGATCTCCTCGGCCGTGAGCGAGGGG 42310 | ||| ||| |||||||| ||||| ||| | |||| | | ||| | || | Sbjct 76361 ACGGCGCACATGCGCTCCTGGGACTCGCTGGAGAGCACCTCCGCCGGCGTCATTCCGGTG 76420 Query 42311 TCGCGGAGGAGCACGTTGTCGAGCGAGACGTGCATTCCGCTGTTGCCGTTGGCGGCGAGC 42370 |||| || | ||| |||||| || |||||| |||| || ||| || || || Sbjct 76421 GCGCGCAGCGGAACGCGATCGAGCTCGATGTGCATGCCGCCGTCGCCCGCGGACGCCAGT 76480 Query 42371 TCGCTCGTGGCGCAGGAGATGCCTGCAGCCCCGAGGTCCTGGATCGCCTCGACCAGCTCG 42430 || ||||||||||| | || || | |||||||||||||| | |||| |||| Sbjct 76481 TCCGAGGTGGCGCAGGACAATCCGGCGCCGCCGAGGTCCTGGATGCCGACGACGAGCTTC 76540 Query 42431 TCGCGGTACAGCTCCAGGCAGCACTCGATGAGCACCTTCTCGGCGAAGGG 42480 | |||| ||||| |||||||||||||||||||||||||||| ||| || Sbjct 76541 TGCTGGTAGAGCTCGAGGCAGCACTCGATGAGCACCTTCTCGGTGAACGG 76590 Score = 141 bits (156), Expect = 3e-29 Identities = 167/226 (74%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 42536 GAGGCGAGGATCGACGCGCCGCCGATCCCGTCACCCCCCGTGCGCGCCGCGAAGAGGACG 42595 ||||| |||| ||| |||||||||| ||||| ||| |||||||| |||| |||| | Sbjct 76649 GAGGCCAGGACGGACACGCCGCCGATGCCGTCGAGCCCGGTGCGCGCGCCGAACAGGATG 76708 Query 42596 ACCTTGTTGCCTAGGCCCGTCGCGTTGGCGAGCTTGAGGTCCTCGTGCCGGAGCACGCCC 42655 | ||||||||| ||||| |||| || || | ||||||||| || | |||||| Sbjct 76709 ATCTTGTTGCCGGTGCCCGACGCGAACGCCAGGTGCAGGTCCTCGGTGCGCATGACGCCC 76768 Query 42656 ACCGCCAGGGCGTTGACCAGCGGATTGGCCTGATAGACGGCATCGAACACGGTCTCGCCG 42715 | ||||||||||| ||||| ||| | || ||| ||||| |||||||||||| Sbjct 76769 GCGCACAGGGCGTTGAGGAGCGGGTTGCCGGCGTACGAGGCGTCGAAGACGGTCTCGCCG 76828 Query 42716 CCGATGTTCGGCAGACCGAGGCAGTTGCCGTAGAAGCTGATGCCGC 42761 || | ||| ||||| || ||| |||||||||| || || ||||| Sbjct 76829 CCCACGTTGGGCAGGCCCAGGGAGTTGCCGTACCCGCCGACGCCGC 76874 >seq49429 Length=1101 Score = 179 bits (198), Expect = 1e-40 Identities = 220/298 (74%), Gaps = 2/298 (1%) Strand=Plus/Plus Query 11085 CGGTGGCGAACTTCACCATCGCATCGACGCCGCGCACCTTCGACCGTCAGGCGAACGAGT 11144 |||| |||||||||||| |||| || || || ||||||||||| || ||| | ||||||| Sbjct 31 CGGTCGCGAACTTCACCGTCGCGTCCACTCCCCGCACCTTCGATCGCCAGACCAACGAGT 90 Query 11145 GGAAGGACGGCGAAGCGCTGTTCCTCCG-TGCGTCCGTGTGGCGCGAGTTCGCGGAGCAC 11203 ||||||||||||| |||||||||||||| ||| | | ||||| ||| |||||| || Sbjct 91 GGAAGGACGGCGACGCGCTGTTCCTCCGCTGC-AACATCTGGCGTGAGGCAGCGGAGAAC 149 Query 11204 GTGGCGGGTTCGCTGACCAAGGGCATGCGGGTCATCGCATCCGGACGCCTGAAGCAGCGC 11263 || || | || ||||| ||| ||||| ||| | || || || |||||| Sbjct 150 GTCGCCGAGTCCCTGACTCGCGGCGCACGGGTGGTCGTCACGGGCCGGCTCCGGCAGCGT 209 Query 11264 TCCTACCAGGACCGCGAGGGCAACAACCGCACCGCGATCGAGCTCGAGGTGGACGAGATC 11323 |||| | || || ||||| | || ||||| | |||| |||||||| |||||| || Sbjct 210 TCCTTCGAGACGCGTGAGGGTGAGAAGCGCACTGTCGTCGAACTCGAGGTCGACGAGGTC 269 Query 11324 GGCCCGAGCCTCCGCTACGCGACGGCGCAGGTCACCCGGGCCGCCCGCCGTGACGGCG 11381 ||||| ||||||||||||||||| |||||| | || | ||| ||| ||||| Sbjct 270 GGCCCTTCGCTCCGCTACGCGACGGCCAAGGTCAACAAGGTCAGTCGCGGTGGCGGCG 327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148138362656380