Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_009816.1 Length=70579 Score E Sequences producing significant alignments: (Bits) Value seq21546 273 1e-68 >seq21546 Length=10379 Score = 273 bits (302), Expect = 1e-68 Identities = 472/674 (70%), Gaps = 24/674 (4%) Strand=Plus/Plus Query 59889 GGATTGCCTCGGTTAGCTGCATCATCGAACATAAGGTAAGGATAGCCAGACTCAAACTGA 59948 || ||| | ||||| | | || |||||||| | ||| || ||||| ||||| ||||| Sbjct 9706 GGGTTGGCCCGGTTCACCGTGTCCTCGAACATGATGTACGGGTAGCCCGACTCGAACTGC 9765 Query 59949 ACCTCTGCGATGGTCTGGAACAGCTTTCGAGCGTCGATAAAGGTCTTAGCGATCCTATCA 60008 | ||| |||| ||||||||| | || || || | ||| |||||| ||| | | Sbjct 9766 AGCTCGGCGAGGGTCTGGAAGAACTCGCGCGCCTTGATCTTGGTCTTGCGGATGCGCTTG 9825 Query 60009 TCTTTTAGCCACGTGTCGTACATCTCGGTTACGGAGAACTCGGACAGTGACTTTCCGTAC 60068 || | | | | || |||| ||||||| ||| | || | | | | ||||| Sbjct 9826 TCGTCCACCATCTCGTGGTACTTCTCGGTGACGTTCACGTCCGCGAAGGGCACGCCGTAT 9885 Query 60069 ACCTTATTGATGTCATAAGGAGAGAATAGGGCCATAGGCTCGCTCTCCTTGGCAAGGCGG 60128 | | || ||| || || ||||| ||| ||| |||| ||| ||| || || | Sbjct 9886 ATGCGCTCGACGTCGTACGGCGAGAACAGGTACATGTCCTCGTTCTTCTTCGCCAGCTCG 9945 Query 60129 AACGTGACATCAGGAACGATAACTCCTAGGGAGAGAGTCTTAATACGGATCTTCTCGTCG 60188 ||||||| || || | | || || || || || ||||| || |||||||||||||| Sbjct 9946 AACGTGATGTCCGGGATCACCACGCCCAGCGACAGCGTCTTGATGCGGATCTTCTCGTCC 10005 Query 60189 GCGTTTTCACGCTTGGTATCCAGGAA-CGCAAGGATGTCGGGGTGGTGTGCGTTCAAATA 60247 ||||| || |||||||| || ||||| || | ||||||||||||||| |||| || || Sbjct 10006 GCGTTCTCGCGCTTGGTGTCGAGGAAGCGGTA-GATGTCGGGGTGGTGCGCGTGCAGGTA 10064 Query 60248 TACCGCCCCTGCGCCCTGCCTTGCACCCAGTTGGTTAGAGTAGGAGAAGCTATCTTCTAG 60307 ||||| || || ||||||| ||||| || ||||| | ||||||||| || || || Sbjct 10065 CACCGCGCCCGCACCCTGCCGGGCACCGAGCTGGTTGGCGTAGGAGAACGAGTCCTCGAG 10124 Query 60308 AATCTTCATCACAGGGATGACTCCAGAGGCCTGACCTTCTCGA--CCCTTAATCGGAGCT 60365 | |||||| | |||||||| || || | |||| ||||||| | ||| ||||| || Sbjct 10125 CAGCTTCATGATCGGGATGACGCCGGACGACTGA--TTCTCGATGCGCTTGATCGGCGCG 10182 Query 60366 CCTGCCTCGCGGAGGTTG--GAGAATCCAATGCCGACTCCGCCACCACGCTTAGACAGCT 60423 || ||||| || | |||| ||| | ||| ||| |||||||| || ||||| ||||||| Sbjct 10183 CCGGCCTCACGAATGTTGCTGAGCA-GCAACGCC-ACTCCGCCGCCGCGCTTGGACAGCT 10240 Query 60424 GGAG---AGAGTCCTGAACGATTCGACCGATGGACCCCATGGTGTCCTGAACATCGAGGA 60480 | || |||| ||| ||| |||||||||||| ||||| |||||| | || | Sbjct 10241 GCAGGGCCGAGT--TGATCGA-GCGACCGATGGACTCCATGTTGTCCTCGATGCGCAGCA 10297 Query 60481 TGAAGCATGATACTGGCTTGC----CTGCGTCGAGAAGCCCCGCGTTGAGGAAGGTCGGA 60536 |||||| || || |||| || |||| || | |||| ||||||||| ||||| Sbjct 10298 GGAAGCAGGAGACGGGCTCGCCGCGCTGCTTCTTG----CCCGAGTTGAGGAACGTCGGC 10353 Query 60537 GTTGCAGGCTGGAA 60550 || || |||||||| Sbjct 10354 GTCGCGGGCTGGAA 10367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 225559167447800