Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq154 131 4e-25 seq204 109 1e-18 seq1481 87.8 4e-12 >seq154 Length=1683969 Score = 131 bits (144), Expect = 4e-25 Identities = 146/194 (75%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| ||||||| ||| || || || ||||| | || || || |||||| Sbjct 578794 TCCTTCTGGATATTGTAGTCGGAGAGGGTACGGCCATCTTCCAGCTGCTTACCAGCGAAG 578735 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || || ||||| || |||||| |||||||||||||| |||||||| ||||| ||| Sbjct 578734 ATGAGTCGCTGCTGG---TCTGGGGGAATTCCTTCTTTATCTTGGATTTTGGCTTTTACG 578678 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| | || ||||| | ||||| ||||| || || || ||||| Sbjct 578677 TTCTCGATGGTATCAGAAGGCTCAACTTCCAATGTGATGGTCTTTCCTGTTAGGGTCTTC 578618 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 578617 ACGAAAATCTGCAT 578604 >seq204 Length=3085492 Score = 109 bits (120), Expect = 1e-18 Identities = 95/117 (81%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 || ||||||||||||||||| |||||||| ||||| |||| ||| || ||| || || Sbjct 1215760 CCCTCTTTATCCTGGATTTTAGCTTTCACATTTTCAATAGTATCAGACGGTTCAACCTCT 1215701 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG--TTATTCT 288484 || ||||| |||||||| |||| ||| ||||| || ||||||||| || ||||||| Sbjct 1215700 AGGGTGATTGTCTTCCCTGTCAAAGTTTTGACAAAGATCTGCATTGTGCCTTATTCT 1215644 >seq1481 Length=432034 Score = 87.8 bits (96), Expect = 4e-12 Identities = 113/155 (73%), Gaps = 6/155 (4%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || || |||| ||| || ||||| || || || || | || ||||| || ||| Sbjct 222111 AGCACAAGGTGAAGTGTGGACTCCTTTTGAATGTTGTAATCAGAAAGTGTGCGACCATCT 222170 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTA 288378 || || ||||||||||| || |||| | ||| || ||| |||||||||||||| Sbjct 222171 TCCAACTGTTTTCCTGCAAAAATCAATCTCTGCTG---GTCTGGGGGGATTCCTTCTTTG 222227 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC 288413 || ||||| || || ||||||||||| || | ||| Sbjct 222228 TCTTGGATCTTAGCCTTCACGTTTTCAATTGTATC 222262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178726834058860