Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq254 98.7 1e-15 seq5419 91.5 2e-13 >seq254 Length=3229631 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 |||||||||| ||||| |||||||| |||| ||||| |||||||| || ||||||| Sbjct 2115752 CCTCGTCACGTGAGATCAGTTCATTGCTGAAGGTTAGTCCGGGCATGAGGCCACGCTTCT 2115811 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACG 126185 | | |||||| || | | || ||| ||||||||||| ||||| || ||||||| Sbjct 2115812 TGAGCCAGAAGATGGAAGCGAAGCTACCGGAGAAGAAGATACCCTCGACTGCAGCGAACG 2115871 Query 126186 CAAAGAGACGCTCAGCAAA 126204 | | | ||||||| |||| Sbjct 2115872 CTACAATACGCTCACCAAA 2115890 >seq5419 Length=38822 Score = 91.5 bits (100), Expect = 2e-13 Identities = 255/381 (67%), Gaps = 8/381 (2%) Strand=Plus/Plus Query 10775 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 10834 |||| |||| || || ||||| || || || || || ||| ||| ||||| || Sbjct 32384 ACGGGAATCTGCCGGTCGAAGCGGCCGGGACGCAGCAGCGCGGGGTCGAGGATGTCGGGA 32443 Query 10835 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTC 10894 ||||| ||||||||||||| | || ||| || || | | ||||| |||||||| | | Sbjct 32444 CGGTTGGTCGCCGCGATGAGGATGACGCCGGTGCGGTCACCGAAGCCGTCCATCTC-GAC 32502 Query 10895 AAG-AGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCG-GGCATACCACCCGCACTGC 10952 || || || |||| ||| || |||||||| || | || || | ||||||| | Sbjct 32503 GAGCAGCTGGTTGAGGGTCTGCTCGCGTTCGTCGTGACCGCCGCCGA-GGCCCGCACCAC 32561 Query 10953 GTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA-CGGTTGATTTTCACGG 11011 | || ||| |||||||| || || || | ||| | ||| || || || | | | || Sbjct 32562 GCTGGCGACCCACGGCGTCGATCTCGTCCACGAAGATGATGCAGGGGCTGTTCTGCTTGG 32621 Query 11012 GCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAA 11071 | | || || | || || || | ||| |||||||| || ||||| || || || Sbjct 32622 CCTGC-TCGAACAGGTCGCGCACGCGGGAGGCGCCGACACCGACGAACATCTCGACGAAG 32680 Query 11072 TTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAG 11130 | | | ||| | || | || ||| || ||| | ||| || || | ||| || ||||| Sbjct 32681 TCCGAGCCGG-AGATGGTGAAGAACGGCACGCCCGCTTCGCCGGCCACGGCGCGCGCGAG 32739 Query 11131 GAGGGTCTTCCCCGTCCCAGG 11151 || ||||| || || || || Sbjct 32740 CAGCGTCTTACCGGTGCCGGG 32760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596895355119600