Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq269 100 3e-16 seq4873 96.9 4e-15 seq870 96.9 4e-15 seq910 95.1 1e-14 seq464 95.1 1e-14 seq312 95.1 1e-14 seq163 95.1 1e-14 seq154 95.1 1e-14 seq188 91.5 2e-13 seq1475 89.7 6e-13 seq8807 87.8 2e-12 seq5278 84.2 2e-11 >seq269 Length=2107088 Score = 100 bits (110), Expect = 3e-16 Identities = 72/82 (88%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1943516 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 1943457 Query 57067 TACTACCGAGGA-TTGAATATA 57087 |||||||||||| ||||| ||| Sbjct 1943456 TACTACCGAGGACTTGAAGATA 1943435 Score = 96.9 bits (106), Expect = 4e-15 Identities = 69/78 (88%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1942582 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 1942523 Query 57067 TACTACCGAGGA-TTGAA 57083 |||||||||||| ||||| Sbjct 1942522 TACTACCGAGGACTTGAA 1942505 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 180966 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 181025 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 181026 TACTACCGAGGA 181037 >seq4873 Length=39495 Score = 96.9 bits (106), Expect = 4e-15 Identities = 69/78 (88%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 38820 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 38761 Query 57067 TACTACCGAGGA-TTGAA 57083 |||||||||||| ||||| Sbjct 38760 TACTACCGAGGACTTGAA 38743 >seq870 Length=576414 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||| || |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 258084 AAAAGTTACCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 258143 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 258144 TGACCACTATACTACCGAGGA 258164 >seq910 Length=926833 Score = 95.1 bits (104), Expect = 1e-14 Identities = 68/77 (88%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 190132 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 190073 Query 57067 TACTACCGAGGA-TTGA 57082 |||||||||||| |||| Sbjct 190072 TACTACCGAGGACTTGA 190056 >seq464 Length=805149 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 14922 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 14981 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 14982 TACTACCGAGGA 14993 >seq312 Length=1381084 Score = 95.1 bits (104), Expect = 1e-14 Identities = 71/82 (87%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 56998 AAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||||| | | ||| |||| | |||||||||| ||||||||||||||||||||| ||| Sbjct 689537 AAAAATATACCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 689596 Query 57057 CTCACCACTATACTACCGAGGA 57078 || ||||||||||||||||||| Sbjct 689597 CTGACCACTATACTACCGAGGA 689618 >seq163 Length=2096164 Score = 95.1 bits (104), Expect = 1e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 260461 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 260520 Query 57067 TACTACCGAGGATTGAATAT 57086 |||||||||||| | |||| Sbjct 260521 TACTACCGAGGACTACATAT 260540 >seq154 Length=1683969 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||||| || |||| ||||| || | ||| ||| || || || ||||| |||| Sbjct 580024 ACCTCCTCGTAGTCGCAGGACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 579965 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||| || || | || || || |||||||||||||| ||||||||||||||||| | || Sbjct 579964 CAGGGTACGGCCATCTTCCAGTTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGAGG 579905 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | ||||| | | ||| |||| | |||| || | | || || | || | Sbjct 579904 AATTCCTTCCTTAT-CTTGAATTTTGGCCTTGACATTCTCAATGGTATCAGATGGCTCAA 579846 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | ||||||||||| || || | ||||| || || || ||||| Sbjct 579845 CTTCCAAAGTGATGGTTTTACCGGTCAATGTCTTCACGAAAATCTGCAT 579797 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||||| | |||| ||||| || | || |||||| || |||||||| || | Sbjct 578831 ACCTCCTCGAAGTCGCAGGACCAAGTGGAGGGTTGACTCCTTCTGGATATTGTAGTCGGA 578772 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || ||||||||||||||||| ||||||||||||||||| | || Sbjct 578771 GAGGGTACGGCCATCTTCCAGCTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGGGG 578712 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | || || || |||||| ||| | || | | || || | || || Sbjct 578711 AATTCCTTCTTTATCTTGGATTTTGGCTTTTACGTTCTCGATGGTATCAGAAGGCTCAAC 578652 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| || || ||||| ||||| || || || ||||| Sbjct 578651 TTCCAATGTGATGGTCTTTCCTGTTAGGGTCTTCACGAAAATCTGCAT 578604 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||||| | |||| ||||| || | ||| ||| || || || ||||| |||| Sbjct 579059 ACCTCCTCGAAGTCGCAGGACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 579000 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 |||||| || | || || |||||||| |||||||| ||||||||||||||||| | || Sbjct 578999 CAGAGTACGGCCATCTTCCAGCTGCTTTCCAGCGAAGATGAGTCGCTGCTGGTCTGGAGG 578940 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | ||||| || ||| || || | || | | || || | || || Sbjct 578939 AATTCCTTCCTTATCTTGGATCTTGGCCTTAACATTCTCAATAGTATCAGATGGCTCAAC 578880 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||||||||| || || || || || || ||||| ||||| Sbjct 578879 TTCCAAGGTGATGGTTTTTCCTGTAAGGGTTTTCACGAAGATCTGCAT 578832 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||||| | |||| ||||| || | || |||||| || || ||||| || | Sbjct 578603 ACCTCCTCGAAGTCGCAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGA 578544 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || || |||||||||||||| ||||||||||||||||| | || Sbjct 578543 GAGGGTACGGCCATCTTCCAGTTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGAGG 578484 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | ||||| | | ||| | || | |||| || | | || ||| | || | Sbjct 578483 AATTCCTTCCTTAT-CTTGAATCTTAGCCTTGACATTCTCAATGGTATCGGATGGCTCAA 578425 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | ||||| ||||| || || | ||||| || ||||| ||||| Sbjct 578424 CTTCTAAAGTGATAGTTTTACCAGTCAATGTCTTCACGAAGATCTGCAT 578376 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||||| | |||| ||||| || | || |||||| || || ||||| |||| Sbjct 580252 ACCTCCTCGCAGTCGCAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGA 580193 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || |||||||| |||||||| || ||||||||||| || | || Sbjct 580192 GAGGGTACGGCCATCTTCCAGCTGCTTTCCAGCGAAGATAAGTCGCTGCTGATCTGGGGG 580133 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | ||||| | | ||| | || | |||| || | | || ||| | || | Sbjct 580132 AATTCCTTCCTTAT-CTTGAATCTTAGCCTTGACATTCTCAATGGTATCGGATGGCTCAA 580074 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | ||||||||||| || || | ||||| || ||||| ||||| Sbjct 580073 CTTCCAAAGTGATGGTTTTACCGGTCAATGTCTTCACGAAGATCTGCAT 580025 >seq188 Length=1639871 Score = 91.5 bits (100), Expect = 2e-13 Identities = 75/90 (83%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 56998 AAAAATTTT-CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 ||||||| | ||| |||| | |||||||||| ||||||||||||||||||||| ||| Sbjct 35859 AAAAATTGTACTCTCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 35800 Query 57057 CTCACCACTATACTACCGAGGATTGAATAT 57086 || |||||||||||||||| || | | ||| Sbjct 35799 CTGACCACTATACTACCGAAGACTTACTAT 35770 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 57012 CGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 57071 |||| | |||||||||| ||||||||||||||||||||| ||||| |||||||||||| Sbjct 35079 CGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTA 35020 Query 57072 CCGAGGATTGAATATATA 57089 |||| || | ||| ||| Sbjct 35019 CCGAAGACTCTATAAATA 35002 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||| | | ||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 96133 AAAAGTGTACTCTCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 96192 Query 57058 TCACCACTATACTACCGAGGA 57078 | |||||||||||||||| || Sbjct 96193 TGACCACTATACTACCGAAGA 96213 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57012 CGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 57071 |||| | |||||||||| ||||||||||||||||||||| ||||| |||||||||||| Sbjct 42155 CGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTA 42096 Query 57072 CCGAGGATTGAATAT 57086 |||| || | | ||| Sbjct 42095 CCGAAGACTTACTAT 42081 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 57012 CGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 57071 |||| | |||||||||| ||||||||||||||||||||| ||||| |||||||||||| Sbjct 89113 CGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTA 89172 Query 57072 CCGAGGA 57078 |||| || Sbjct 89173 CCGAAGA 89179 Score = 86.0 bits (94), Expect = 7e-12 Identities = 69/82 (84%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 56998 AAAAATTTT-CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||||| | ||| |||| | |||||||||| ||||||||||||||||||||| ||| Sbjct 95615 AAAAATAGTACTCTCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 95674 Query 57057 CTCACCACTATACTACCGAGGA 57078 || |||||||||||||||| || Sbjct 95675 CTGACCACTATACTACCGAAGA 95696 >seq1475 Length=480095 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/194 (71%), Gaps = 1/194 (1%) Strand=Plus/Plus Query 42019 CCTTT-TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || |||||||| |||| ||||| ||| | || |||| ||| ||||| || || Sbjct 62652 CCTTTCTGTATATTGTAGTCAGAGAGAGTACGCCCATCTTCTAACTGTTTACCGGCAAAA 62711 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || |||||||||||||| | || | | |||||| ||| || ||| |||| | Sbjct 62712 ATCAGTCGCTGCTGGTCTGGGGGGATTCCCTCCTTATCCTGTATCTTTGCCTTGACATTT 62771 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | ||||| | || || || | || |||||||| ||||| || || || ||| Sbjct 62772 TCAATAGTGTCTGATGGCTCGACCTCAAGGGTAATGGTTTTACCCGTGAGGGTTTTCACA 62831 Query 42198 AAGATTTGCATTTT 42211 || |||||||| || Sbjct 62832 AAAATTTGCATGTT 62845 >seq8807 Length=11549 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||| | |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 11206 AAAAGTAATCTCTCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 11265 Query 57058 TCACCACTATACTACCGAGGA 57078 | |||||||||||||||| || Sbjct 11266 TGACCACTATACTACCGAAGA 11286 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 57012 CGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 57071 |||| | |||||||||| ||||||||||||||||||||| ||||| |||||||||||| Sbjct 8592 CGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTA 8533 Query 57072 CCGAGGA 57078 |||| || Sbjct 8532 CCGAAGA 8526 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57012 CGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 57071 |||| | |||||||||| ||||||||||||||||||||| ||||| |||||||||||| Sbjct 9229 CGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTA 9170 Query 57072 CCGAGGATTGAATAT 57086 |||| || | | ||| Sbjct 9169 CCGAAGACTTACTAT 9155 >seq5278 Length=33857 Score = 84.2 bits (92), Expect = 2e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 |||||||||| ||||||||||||||||||||| ||||| |||||||||||||||| || Sbjct 7847 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTACCGAAGA 7905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542796087880800