Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq154 131 2e-25 seq1481 91.5 1e-13 seq1475 87.8 2e-12 >seq154 Length=1683969 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || |||||||| || | | ||| || | ||||| || ||||| || Sbjct 579993 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAGTTGCTTACCA 579934 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | ||||| ||||||||||| |||||||||||||| || ||||| ||||| ||| Sbjct 579933 GCGAAGATGAGTCGCTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGAATTTTGGCCTTG 579874 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | |||||| | || ||||| | ||| | ||| || |||||||| || Sbjct 579873 ACATTCTCAATGGTATCAGATGGCTCAACTTCCAAAGTGATGGTTTTACCGGTCAATGTC 579814 Query 64427 TTTACGAAAATTTGCAT 64443 || |||||||| ||||| Sbjct 579813 TTCACGAAAATCTGCAT 579797 Score = 113 bits (124), Expect = 5e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | || ||| || | ||||| || ||||| || Sbjct 578572 GTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCTTCCAGTTGCTTACCA 578513 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | ||||| ||||||||||| |||||||||||||| || ||||| || || ||| Sbjct 578512 GCGAAGATGAGTCGCTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGAATCTTAGCCTTG 578453 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | ||||| | || ||||||| ||| | || || || ||||| || Sbjct 578452 ACATTCTCAATGGTATCGGATGGCTCAACTTCTAAAGTGATAGTTTTACCAGTCAATGTC 578393 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 578392 TTCACGAAGATCTGCAT 578376 Score = 113 bits (124), Expect = 5e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || || ||||| || | || ||| || | ||||| |||||||| || Sbjct 578800 GTTGACTCCTTCTGGATATTGTAGTCGGAGAGGGTACGGCCATCTTCCAGCTGCTTACCA 578741 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | ||||| ||||||||||| || |||||||||||||| ||||| ||||| ||| Sbjct 578740 GCGAAGATGAGTCGCTGCTGGTCTGGGGGAATTCCTTCTTTATCTTGGATTTTGGCTTTT 578681 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | |||||| | || ||||| | || | |||||| || || | || Sbjct 578680 ACGTTCTCGATGGTATCAGAAGGCTCAACTTCCAATGTGATGGTCTTTCCTGTTAGGGTC 578621 Query 64427 TTTACGAAAATTTGCAT 64443 || |||||||| ||||| Sbjct 578620 TTCACGAAAATCTGCAT 578604 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| || || || | || | ||||| || || || |||||||| || | Sbjct 579796 ACCTCCTCGCAGTCGCAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGA 579737 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||| || | ||||| ||||| || || || | ||||| ||||||||||| ||||| Sbjct 579736 GAGGGTACGGCCATCTTCCAGCTGTTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGAGG 579677 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || ||||| || || ||| ||| ||| | ||||| | || || Sbjct 579676 AATTCCTTCCTTATCTTGGATCTTGGCCTTAACATTCTCAATAGTATCGGATGGCTCAAC 579617 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | ||| || || || | ||||| ||||| || ||||| Sbjct 579616 TTCCAAGGTGATGGTTTTTCCTGTAAGGGTTTTCACGAAGATCTGCAT 579569 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| || || || | || | || || || || || |||||||| || | Sbjct 580252 ACCTCCTCGCAGTCGCAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGA 580193 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||| || | ||||| |||||||| || || | || || |||||||| || || || Sbjct 580192 GAGGGTACGGCCATCTTCCAGCTGCTTTCCAGCGAAGATAAGTCGCTGCTGATCTGGGGG 580133 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || ||||| || || ||| ||| ||| | ||||| | || || Sbjct 580132 AATTCCTTCCTTATCTTGAATCTTAGCCTTGACATTCTCAATGGTATCGGATGGCTCAAC 580073 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | ||| | ||| || |||||||| || || ||||| || ||||| Sbjct 580072 TTCCAAAGTGATGGTTTTACCGGTCAATGTCTTCACGAAGATCTGCAT 580025 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| |||| ||||| || ||||| || || |||||||| || | | ||| || | || Sbjct 580465 AAGGACTAAATGAAGTGTAGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTTCGGCCATC 580406 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||||||||||| || || | || || ||||||||||| |||||||||||||| || || Sbjct 580405 CTCAAGCTGCTTTCCAGCGAAGATAAGTCGCTGCTGGTCTGGAGGAATTCCTTCCTTATC 580346 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| | ||| ||| ||| || | |||||| | || || || | || | || Sbjct 580345 TTGAACTTTAGCCTTGACATTTTCAATGGTATCAGATGGCTCAACCTCCAAGGTAATTGT 580286 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| || || | || || |||||||| ||||| Sbjct 580285 CTTTCCTGTTAGGGTCTTCACGAAAATCTGCAT 580253 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || |||||||| || | | || || | ||||| |||||||| || Sbjct 579028 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGGCCATCTTCCAGCTGCTTTCCA 578969 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | ||||| ||||||||||| |||||||||||||| || ||||| || || ||| Sbjct 578968 GCGAAGATGAGTCGCTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGGATCTTGGCCTTA 578909 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | |||||| | || ||||| | || | ||| || || || | ||| Sbjct 578908 ACATTCTCAATAGTATCAGATGGCTCAACTTCCAAGGTGATGGTTTTTCCTGTAAGGGTT 578849 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 578848 TTCACGAAGATCTGCAT 578832 >seq1481 Length=432034 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || |||| || || || ||||||||||||||||| | | ||||| | ||| Sbjct 222111 AGCACAAGGTGAAGTGTGGACTCCTTTTGAATGTTGTAATCAGAAAGTGTGCGACCATCT 222170 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | ||| || || ||| |||| | | ||||||||| || || ||||||||||| ||| Sbjct 222171 TCCAACTGTTTTCCTGCAAAAATCAATCTCTGCTGGTCTGGGGGGATTCCTTCTTTGTCT 222230 Query 64352 TGTATTTT 64359 || || || Sbjct 222231 TGGATCTT 222238 >seq1475 Length=480095 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 64254 CTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAA 64313 |||| || || ||||| || | || || ||| | ||||| | ||| || |||||| ||| Sbjct 62653 CTTTCTGTATATTGTAGTCAGAGAGAGTACGCCCATCTTCTAACTGTTTACCGGCAAAAA 62712 Query 64314 TGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCT 64373 | || ||||||||||| || || ||||| || || || ||||| ||| ||| ||| | Sbjct 62713 TCAGTCGCTGCTGGTCTGGGGGGATTCCCTCCTTATCCTGTATCTTTGCCTTGACATTTT 62772 Query 64374 CCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 | | || || | || || || | || | ||| || || || | ||||| || | Sbjct 62773 CAATAGTGTCTGATGGCTCGACCTCAAGGGTAATGGTTTTACCCGTGAGGGTTTTCACAA 62832 Query 64434 AAATTTGCATTTT 64446 |||||||||| || Sbjct 62833 AAATTTGCATGTT 62845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499261509982800