Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq49429 122 4e-23 seq9379 109 3e-19 >seq49429 Length=1101 Score = 122 bits (134), Expect = 4e-23 Identities = 197/283 (70%), Gaps = 3/283 (1%) Strand=Plus/Plus Query 59325 CCGAGCTGCGGTTCACCCAAGGTGGGCAGGCCGTCGCCAACTTCACCGTCGTGTCCAACG 59384 |||| || || ||||||| | || ||| ||||| ||||||||||||| ||||| Sbjct 1 CCGAACTTCGATTCACCCCCGCCGGTGCGGCGGTCGCGAACTTCACCGTCGCGTCCACTC 60 Query 59385 AACGCCGCCGCGACGCCCAGGGCAAC---TGGGTCGACGGCGACGCCACATTCCTCCGCT 59441 ||| | ||| |||| |||| ||| ||||||||||| |||||||||| Sbjct 61 CCCGCACCTTCGATCGCCAGACCAACGAGTGGAAGGACGGCGACGCGCTGTTCCTCCGCT 120 Query 59442 GCACCATCTGGCGCGACGCCGCCGAGAACGTAGCGGAAAGCCTCCAGAAAGGCCAGCGCG 59501 ||| ||||||||| || || || |||||||| || || ||| ||| || | Sbjct 121 GCAACATCTGGCGTGAGGCAGCGGAGAACGTCGCCGAGTCCCTGACTCGCGGCGCACGGG 180 Query 59502 TCATCGTGCATGGCTACCTCAAGCAGCGCTCCTTCGAGACCAAGGAAGGCGACAAGCGCA 59561 | |||| ||| ||| |||||| ||||||||||| || || || ||||||| Sbjct 181 TGGTCGTCACGGGCCGGCTCCGGCAGCGTTCCTTCGAGACGCGTGAGGGTGAGAAGCGCA 240 Query 59562 CCGTCATCGAGGTGGAGGTAGACGAGATCGGCCCGTCGCTGCG 59604 | ||| |||| | ||||| |||||| ||||||| ||||| || Sbjct 241 CTGTCGTCGAACTCGAGGTCGACGAGGTCGGCCCTTCGCTCCG 283 >seq9379 Length=20973 Score = 109 bits (120), Expect = 3e-19 Identities = 179/258 (69%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 66447 TTCTACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGAG 66506 ||||||||||| || || ||||| ||||| | |||| || |||||| ||| || Sbjct 17429 TTCTACGCCTCCGTACGCATGGACATCCGCCGCATCGAAACGCTGAAGGACGGCACGGAC 17488 Query 66507 GCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCCGCACCGC 66566 || || |||||||| || ||||| ||||| |||||||||||| || |||| || | Sbjct 17489 GCGGTGGGCAACCGGACCCGCGTCAAGGTGGTCAAGAACAAGGTGTCGCCGCCCTTCAAG 17548 Query 66567 CAGGCTGAGTTTTCCATCGTCTACGGCGAGGGCATTTCCCGCGAGGCTGAACTCCTCGAC 66626 ||||| ||||| |||| | |||||| ||||||| | |||| || ||||| Sbjct 17549 CAGGCGGAGTTCGACATCCTGTACGGCAAGGGCATCAGCAAGGAGGGCTCGCTGATCGAC 17608 Query 66627 ATGGCCGTTTCCCGAGGGCTCATCAAGAAGTCTGGGGCCTGGTTCAAGTACGGGGACAAG 66686 |||| ||| | || || | ||||| || | ||||||| |||| || | | Sbjct 17609 ATGGGCGTGGAGCACGGTTTCGTGCGCAAGTCCGGCTCGTGGTTCACCTACGAGGGCGAT 17668 Query 66687 AACATCGGCCAGGGCAAG 66704 | |||||||||||||| Sbjct 17669 CAGCTCGGCCAGGGCAAG 17686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242289045022040