Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_011273.1 Length=164602 Score E Sequences producing significant alignments: (Bits) Value seq27002 435 3e-117 seq5419 378 7e-100 seq811 98.7 1e-15 >seq27002 Length=7239 Score = 435 bits (482), Expect = 3e-117 Identities = 352/426 (83%), Gaps = 0/426 (0%) Strand=Plus/Plus Query 155934 CGCCATCAACTGGAACCGCGTGATCGACGAGAAGGACGCGGAGGTGTGGAACCGGCTGAC 155993 ||| |||||||||||||||||| ||||| |||||||| ||||| ||| | || || || Sbjct 884 CGCGATCAACTGGAACCGCGTGCAGGACGACAAGGACGCCGAGGTCTGGGATCGCCTCAC 943 Query 155994 CAACAACTTCTGGCTGCCGGAGAAGATCCCGGTGTCCAATGACGTCCAGTCGTGGCACCA 156053 | |||||||||||| || |||||| | ||||||||||| ||| ||| ||||||||| Sbjct 944 CGGCAACTTCTGGCTCCCCGAGAAGGTGCCGGTGTCCAACGACATCCCGTCGTGGCAGAC 1003 Query 156054 GCTGACCGAGGAAGAGCGCCTGATCACCATGCGGGTGTTCACCGGCCTGACGATGCTGGA 156113 ||| ||||| | ||| | | ||||||||||||||||||||||||||||| |||| || Sbjct 1004 GCTCACCGAACACGAGAAGCAGCTCACCATGCGGGTGTTCACCGGCCTGACGCTGCTCGA 1063 Query 156114 CACCATCCAGGGCACCGTCGGCGCGGTCTCGCTCATCCCGGACGCCATCACCCCGCACGA 156173 |||||||||||||||||| ||||| || ||||||||||| ||||| |||||||||||||| Sbjct 1064 CACCATCCAGGGCACCGTGGGCGCCGTGTCGCTCATCCCCGACGCGATCACCCCGCACGA 1123 Query 156174 GGAGGCGGTGTACACCAACATCGCGTTCATGGAGAGCGTGCACGCACGCAGCTACTCGAA 156233 |||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 1124 GGAGGCGGTGTACACCAACATCGCGTTCATGGAGTCGGTGCACGCCAAGTCCTACTCGTC 1183 Query 156234 CATCTTCTCGACGCTGTGCTCCACCAAGGAGATCGACGCCGCGTTCCGCTGGTCGGAGGA 156293 |||||||| || ||||||||||| ||| ||||||| ||||||||||||||||||||| Sbjct 1184 GATCTTCTCCACCCTGTGCTCCACGCGGGACATCGACGACGCGTTCCGCTGGTCGGAGGA 1243 Query 156294 GAACGCCAACCTGCAGAAGAAGGCTGAGATCGTGCTCAGCTACTACAACGGTGACGACCC 156353 |||| ||||||||||| ||||| ||||| | ||||||| | || |||||||| Sbjct 1244 GAACCCCAACCTGCAGCGCAAGGCGTCCATCGTCATGGACTACTACCAGGGCGACGACCC 1303 Query 156354 GCTCAA 156359 |||||| Sbjct 1304 GCTCAA 1309 >seq5419 Length=38822 Score = 378 bits (418), Expect = 7e-100 Identities = 344/434 (79%), Gaps = 0/434 (0%) Strand=Plus/Minus Query 152886 ATCTTCGAGAGATTCACCGACCGCGCCCGTCGCGTCTGCGTCCTCGCCCAAGAGGAAGCG 152945 || |||||||| |||||||||||||| || |||||| |||||| |||||||| || || Sbjct 21891 ATGTTCGAGAGGTTCACCGACCGCGCACGGCGCGTCGTCGTCCTGGCCCAAGAAGAGGCC 21832 Query 152946 CGCATGCTCAACCATGCGTACATCGGCACCGAGCATCTGCTGCTCGGGCTGGTCCACGAG 153005 || ||||||||||| ||||||||||| ||||| | ||||| || || |||||||| Sbjct 21831 CGGATGCTCAACCACAACTACATCGGCACGGAGCACATCCTGCTGGGCCTCATCCACGAG 21772 Query 153006 GGCGAGGGCGTAGCCGCCAAGGCGCTGCAGGCGCTCGACATCAACCTGGAGGAGGTGCGT 153065 || || ||||| || || ||| | ||| || |||||| ||| ||| || | ||||| Sbjct 21771 GGTGAAGGCGTGGCGGCGAAGTCCCTGGAGTCGCTCGGGATCTCCCTCGAAGGTGTGCGC 21712 Query 153066 GCCGAGGTCGAGGAGATCATCGGCCACGGCCAGCAGGCACCCACCGGGCACATCCCGTTC 153125 | |||||||||||||||||||||| ||||||||||| || ||||||||||||||||| Sbjct 21711 AGCCAGGTCGAGGAGATCATCGGCCAGGGCCAGCAGGCGCCGTCCGGGCACATCCCGTTC 21652 Query 153126 ACCGACCGCTCCAAGCGCGTCCTGGAGCTGTCGCTGCGCGAGGCGCTGCAGCTCGGCCAC 153185 || ||| ||||| ||||| ||||| || |||||||||||||||||||| ||| Sbjct 21651 ACGCCCCGTGCCAAGAAGGTCCTCGAGCTCAGCCTCCGCGAGGCGCTGCAGCTCGGACAC 21592 Query 153186 AACTACATCGGCACCGAGCATCTCCTGCTGGCCCTGATCCGCGAGGGTGAGGGCGTGGGC 153245 |||||||||||||||||||| ||||||| | ||| || || ||||| |||||||| | | Sbjct 21591 AACTACATCGGCACCGAGCACATCCTGCTCGGCCTCATTCGTGAGGGCGAGGGCGTCGCC 21532 Query 153246 TGCCAGGTGCTGGTGAAGCGCGGCGCGGAGCTGACCAAGGTCCGCCAGGTGGTCATCCAG 153305 |||||| |||||||||| ||||| || || | | || |||||| |||||| ||| Sbjct 21531 GCCCAGGTCCTGGTGAAGCTGGGCGCCGATCTCAACCGCGTGCGCCAGCAGGTCATTCAG 21472 Query 153306 CTGCTGTCCGGGTA 153319 ||||||||||| || Sbjct 21471 CTGCTGTCCGGCTA 21458 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 153122 GTTCACCGACCGCTCCAAGCGCGTCCTGGAGCTGTCGCTGCGCGAGGCGCTGCAGCTCGG 153181 ||||||||||||| | ||||||| | | ||| | | ||||| | | |||| Sbjct 21880 GTTCACCGACCGCGCACGGCGCGTCGTCGTCCTGGCCCAAGAAGAGGCCCGGATGCTCAA 21821 Query 153182 CCACAACTACATCGGCACCGAGCATCTCCTGCTGGCCCTGATCCGCGAGGGTGAGGGCGT 153241 |||||||||||||||||| ||||| ||||||||| ||| |||| ||||||||| ||||| Sbjct 21820 CCACAACTACATCGGCACGGAGCACATCCTGCTGGGCCTCATCCACGAGGGTGAAGGCGT 21761 Query 153242 GG 153243 || Sbjct 21760 GG 21759 >seq811 Length=1020237 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| | |||||||||||||||||| ||||||||||||||| ||| ||| ||||||||| Sbjct 526112 GCGGGATGGAGCAGCTCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCGTAGGTTCAAAT 526053 Query 92675 CCCACTCCCGCCAC 92688 || |||||||| || Sbjct 526052 CCTACTCCCGCAAC 526039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 526194433202400