Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq261 109 4e-19 seq658 107 1e-18 seq30 96.9 3e-15 >seq261 Length=1587481 Score = 109 bits (120), Expect = 4e-19 Identities = 102/127 (80%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 108466 TGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACAC-GACGGCCGACCCACACAA 108524 ||||||| ||| ||| | |||||||||||| |||||| |||| ||||||| ||||| Sbjct 1082104 TGGGTGCGCGACCACCGACAACACCACAAGTACAGTGACACCGACG-CCGACCCCCACAA 1082046 Query 108525 CGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGA 108584 |||||||||||| |||| ||||| ||| | ||||||||||||| |||| | ||||| Sbjct 1082045 CGCCAACAGGGGCTTCTTCTTCTCCCACATCGGATGGCTCATGAGCCGCAAGCATCCCGA 1081986 Query 108585 CGTGATC 108591 |||||| Sbjct 1081985 AGTGATC 1081979 >seq658 Length=852449 Score = 107 bits (118), Expect = 1e-18 Identities = 105/133 (79%), Gaps = 3/133 (2%) Strand=Plus/Plus Query 108840 CAAGAACATTTTCCCAAGAGAAAACAAATTGGTGGCGGCGTTGGCTCTCGGCGAGGGATG 108899 || |||||| ||| | ||| |||| | |||||||| | |||| || ||||||||||| Sbjct 369158 CAGGAACATCAGCCCTACAGAGAACATCTCGGTGGCGGTGCTGGCGCTGGGCGAGGGATG 369217 Query 108900 GCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCGCCGAGTTGGG-GA--ACGA 108956 |||||||||||| |||| ||||||| ||||||||||| |||||| |||| || ||| Sbjct 369218 GCACAACTACCATCACGCATTCCCCTGGGACTACAAGGCGGCCGAGCTGGGCGACTACGG 369277 Query 108957 CTTTAATTTCACC 108969 || || |||||| Sbjct 369278 GTTCAACTTCACC 369290 Score = 87.8 bits (96), Expect = 1e-12 Identities = 175/256 (68%), Gaps = 4/256 (2%) Strand=Plus/Plus Query 108326 TGATCGCGCACGTAGCCGGGTTCGGTGTGACGGCCGGCGTCCATCGGATGTGGACCCACA 108385 || ||| | || || ||| |||| | ||||| || | || || | ||| | |||| Sbjct 365678 TGTTCGGGAACATATGCGGACTCGGGATCACGGCAGGGGCACACCGACTCTGGGCTCACA 365737 Query 108386 AAGCCTACAAGGCCACCGCCCCGTTCAGGGTGTTCCTGGCGCTT--TGCTTCTCGGTGGC 108443 | | |||||||||| || ||||||| || |||| ||| ||| | ||||| Sbjct 365738 AGTCTTACAAGGCCAAGTGGCCTCTCAGGGTCGTCTTGGC-CTTCATGCAGA-CAGTGGC 365795 Query 108444 AGGACAGAACACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGA 108503 |||||| |||| | ||||| || |||||||| ||||| |||| | | || Sbjct 365796 CTTCCAGAACCACATCTACGAATGGGTCAGGGACCACAGGGTGCACCATAAGTTCACGGA 365855 Query 108504 CACGACGGCCGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCT 108563 ||| | |||||||||||||| ||| ||||| |||| ||||| ||| | || ||||| Sbjct 365856 CACCAACGCCGACCCACACAATTCCAGGAGGGGCTTCTTCTTCTCCCACATAGGCTGGCT 365915 Query 108564 CATGATGACCAAGGAC 108579 |||| || |||| || Sbjct 365916 CATGGTGCGCAAGCAC 365931 >seq30 Length=4563892 Score = 96.9 bits (106), Expect = 3e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 108881 TGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCG 108940 |||| | ||||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 3613824 TGGCCATGGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTGGGACTACAAGGCGG 3613883 Query 108941 CCGAGTTGGGGAA 108953 | |||||||| || Sbjct 3613884 CAGAGTTGGGTAA 3613896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381487254227280