Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq154 93.3 4e-14 seq907 89.7 5e-13 seq1481 87.8 2e-12 >seq154 Length=1683969 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | |||| || || || | | |||||||||| || |||||||||||| Sbjct 578602 CCTCCTCGAAGTCGCAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAG 578543 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || ||||| ||||| | |||| || ||||| ||||| ||||| Sbjct 578542 AGGGTACGGCCATCTTCCAGTTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGA 578483 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| || || ||| | || | || | | || | ||| |||| | ||| || Sbjct 578482 ATTCCTTCCTTATC-TTGAATCTTAGCCTTGACATTCTCAATGGTATCGGATGGCTCAAC 578424 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||||||||||| || || || || |||||||| Sbjct 578423 TTCTAAAGTGATAGTTTTACCAGTCAATGTCTTCACGAAGATCTGCAT 578376 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | |||| || || || | | |||||||||| || || ||||||||| Sbjct 578830 CCTCCTCGAAGTCGCAGGACCAAGTGGAGGGTTGACTCCTTCTGGATATTGTAGTCGGAG 578771 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || || || ||||| | |||| || ||||| ||||| || || Sbjct 578770 AGGGTACGGCCATCTTCCAGCTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGGGGA 578711 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || |||||||| || |||||| ||||| | || | ||| || | | ||| || Sbjct 578710 ATTCCTTCTTTATCTTGGATTTTGGCTTTTACGTTCTCGATGGTATCAGAAGGCTCAACT 578651 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || || || || || || ||||||||||| Sbjct 578650 TCCAATGTGATGGTCTTTCCTGTTAGGGTCTTCACGAAAATCTGCAT 578604 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | |||| || || || | | | ||||| || || ||||||||||| | Sbjct 580023 CCTCCTCGTAGTCGCAGGACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 579964 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || ||||| ||||| | |||| || ||||| ||||| ||||| Sbjct 579963 AGGGTACGGCCATCTTCCAGTTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGA 579904 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| || || ||| |||| | || | | || | ||| || | | ||| || Sbjct 579903 ATTCCTTCCTTATC-TTGAATTTTGGCCTTGACATTCTCAATGGTATCAGATGGCTCAAC 579845 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | |||||||| |||| || || || ||||||||||| Sbjct 579844 TTCCAAAGTGATGGTTTTACCGGTCAATGTCTTCACGAAAATCTGCAT 579797 >seq907 Length=523837 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 153036 ACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAGGTTCAAAG 153095 || || |||||||| | | |||||||| |||| | || |||||| |||| || ||| Sbjct 405415 ACCTGGAACTCGCCTGAGAGCACTCGTCGTGAATAGATGTTACTAGTGTAAGGCTCGAAG 405356 Query 153096 GATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCACCAACAAA 153155 || ||||||||||| || || || || || | ||| || |||||| |||| ||||| Sbjct 405355 GACTCGTTATTGCCAAGAATCTGTGCGGTAGATGCAGTGGGCATGGGAGCCAGTAACAAC 405296 Query 153156 GAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCCCACAGCGCC 153215 || || || | || ||| | || | |||| | || ||| |||||||| | Sbjct 405295 GAGTTTCGTACACCATGCTTTGCGATCTTAGCCTTGAGAGCAGCCCAGTCCCACAGGTCG 405236 Query 153216 GACGGTGTCGCGTTCCACATGTCGTACTG 153244 | |||||| | ||||||||| ||||| Sbjct 405235 GTGGGTGTCACTCCCCACATGTCATACTG 405207 Score = 82.4 bits (90), Expect = 8e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 153640 TGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGAT 153699 |||||| || ||||| | ||||||||||||||| || ||| || | || ||||||| Sbjct 396406 TGTACTCGACAATCTCTGTGCAGAGGTTGCTGCACTTGATGGTCCCAAGGTTCTGCTGAT 396347 Query 153700 TGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTG 153757 |||| ||||| ||||| || || || | | ||||||||| | || ||||| || || Sbjct 396346 TGCTCTTGCGGTTGCAGGCATCCTTATATAACATGTACGGAACACCAGTCTCTACCTG 396289 >seq1481 Length=432034 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 138427 TTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATT 138486 |||||||| |||||||| || || || || || | || || |||| | |||| Sbjct 233767 TTTTGAATATTGTAGTCCGACAACGTTCGGCCATCTTCTAACTGCTTCCCGGCAAAGATC 233826 Query 138487 AGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGT-TC 138545 || ||||| || || ||||| || ||||| ||||| ||| | || | |||| | || Sbjct 233827 AGGCGCTGCTGATCAGGAGGAATCCCTTCCTTGTCT-TGAATCTTCGCCTTAACATTCTC 233885 Query 138546 CACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAA 138605 | ||||| | | ||| ||||| | ||| | |||||| || || || || |||||||| Sbjct 233886 GATCGTGTCAGAGGGCTCTACCTCCAACGTAATCGTTTTTCCTGTGAGCGTCTTTACAAA 233945 Query 138606 AATCTGCATG 138615 |||||||||| Sbjct 233946 AATCTGCATG 233955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495881704706400