Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1481 105 6e-18 seq154 98.7 9e-16 >seq1481 Length=432034 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 126924 CTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGA 126983 |||||||||||||||| || || ||| || ||| |||| ||| || || || ||| Sbjct 233765 CTTTTTGAATATTGTAGTCCGACAACGTTCGGCCATCTTCTAACTGCTTCCCGGCAAAGA 233824 Query 126984 TCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTT 127043 ||| ||||||||||| ||||| || || |||||||| || ||| ||| | | | Sbjct 233825 TCAGGCGCTGCTGATCAGGAGGAATCCCTTCCTTGTCTTGAATCTTCGCCTTAACATTCT 233884 Query 127044 CGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 127103 ||| ||||| | ||| || || | || | |||||| || || || || ||||||| Sbjct 233885 CGATCGTGTCAGAGGGCTCTACCTCCAACGTAATCGTTTTTCCTGTGAGCGTCTTTACAA 233944 Query 127104 AAATCTGCATG 127114 ||||||||||| Sbjct 233945 AAATCTGCATG 233955 >seq154 Length=1683969 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || |||| ||||| ||||| || | || |||||||| || || ||||| || | Sbjct 580023 CCTCCTCGTAGTCGCAGGACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 579964 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || || || || |||||| |||| | ||||||||| || ||||| Sbjct 579963 AGGGTACGGCCATCTTCCAGTTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGA 579904 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||| || ||||| ||||| | || | ||| || | ||| ||| Sbjct 579903 ATTCCTTCCTTATCTTGAATTTTGGCCTTGACATTCTCAATGGTATCAGATGGCTCAACT 579844 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||||| ||||||| || || || ||||||||||| Sbjct 579843 TCCAAAGTGATGGTTTTACCGGTCAATGTCTTCACGAAAATCTGCAT 579797 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || || | ||||| ||||| || | || ||||| || || |||||||| ||| Sbjct 578830 CCTCCTCGAAGTCGCAGGACCAAGTGGAGGGTTGACTCCTTCTGGATATTGTAGTCGGAG 578771 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||| || |||||| |||| | ||||||||| || || || Sbjct 578770 AGGGTACGGCCATCTTCCAGCTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGGGGA 578711 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || || || |||||| || | | |||| ||| || | | ||| ||| Sbjct 578710 ATTCCTTCTTTATCTTGGATTTTGGCTTTTACGTTCTCGATGGTATCAGAAGGCTCAACT 578651 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || || || || || || || ||||||||||| Sbjct 578650 TCCAATGTGATGGTCTTTCCTGTTAGGGTCTTCACGAAAATCTGCAT 578604 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || || | ||||| ||||| || | || ||||| || || || ||||| || Sbjct 580251 CCTCCTCGCAGTCGCAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAG 580192 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||| ||||||||| |||| | |||||||||||| || || Sbjct 580191 AGGGTACGGCCATCTTCCAGCTGCTTTCCAGCGAAGATAAGTCGCTGCTGATCTGGGGGA 580132 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||| || || || ||||| | || | ||| || | ||| ||| Sbjct 580131 ATTCCTTCCTTATCTTGAATCTTAGCCTTGACATTCTCAATGGTATCGGATGGCTCAACT 580072 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||||| ||||||| || || || || |||||||| Sbjct 580071 TCCAAAGTGATGGTTTTACCGGTCAATGTCTTCACGAAGATCTGCAT 580025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475136031448800