Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq154 107 2e-18 seq1475 93.3 4e-14 >seq154 Length=1683969 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | || || | || || ||||| ||||| |||||||| || ||| Sbjct 578833 ATACCTCCTCGAAGTCGCAGGACCAAGTGGAGGGTTGACTCCTTCTGGATATTGTAGTCG 578774 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| ||| |||| || || || ||| | || | ||| |||||||| || Sbjct 578773 GAGAGGGTACGGCCATCTTCCAGCTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGG 578714 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| |||||||||||||| ||||| ||| | || | || | ||| || |||| ||| Sbjct 578713 GGAATTCCTTCTTTATCTTGGATTTTGGCTTTTA-CGTTCTCGATGGTATCAGAAGGCTC 578655 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | || | || || || ||||| || || || ||||| ||||| Sbjct 578654 AACTTCCAATGTGATGGTCTTTCCTGTTAGGGTCTTCACGAAAATCTGCAT 578604 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | || || | || || ||||| ||||| ||||| || || ||| Sbjct 578605 ATACCTCCTCGAAGTCGCAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCG 578546 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| ||| |||| ||| || || ||| | || | ||| |||||||| || Sbjct 578545 GAGAGGGTACGGCCATCTTCCAGTTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGA 578486 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| ||||||||||| || |||| || | ||| ||||| | ||| Sbjct 578485 GGAATTCCTTCCTTATCTTGAATCTTAGCCTTGACATTCTCAATGGTATCGGATGGCTCA 578426 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||| | ||||| || || | || || || || || ||||| Sbjct 578425 ACTTCTAAAGTGATAGTTTTACCAGTCAATGTCTTCACGAAGATCTGCAT 578376 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | || || | || || ||||| ||||| ||||| || || || Sbjct 580254 ATACCTCCTCGCAGTCGCAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCA 580195 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| ||| |||| || ||||| ||| | || | ||| ||||| || || Sbjct 580194 GAGAGGGTACGGCCATCTTCCAGCTGCTTTCCAGCGAAGATAAGTCGCTGCTGATCTGGG 580135 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| ||||||||||| || |||| || | ||| ||||| | ||| Sbjct 580134 GGAATTCCTTCCTTATCTTGAATCTTAGCCTTGACATTCTCAATGGTATCGGATGGCTCA 580075 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||| | ||||| ||||| | || || || || || ||||| Sbjct 580074 ACTTCCAAAGTGATGGTTTTACCGGTCAATGTCTTCACGAAGATCTGCAT 580025 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| |||| ||| || || ||| | || | ||| |||||||| || ||||| ||||| || Sbjct 579952 ATCTTCCAGTTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGAATTCCTTCCTT 579893 Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 |||||||||||| |||| || | ||| || || | ||| ||||| | ||| | Sbjct 579892 ATCTTGAATTTTGGCCTTGACATTCTCAATGGTATCAGATGGCTCAACTTCCAAAGTGAT 579833 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||| | || || || ||||| ||||| Sbjct 579832 GGTTTTACCGGTCAATGTCTTCACGAAAATCTGCAT 579797 >seq1475 Length=480095 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| || || ||||| || || | |||| ||| |||||||| || || || || || || Sbjct 62687 ATCTTCTAACTGTTTACCGGCAAAAATCAGTCGCTGCTGGTCTGGGGGGATTCCCTCCTT 62746 Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 ||| || || ||| |||| ||| | ||||| || | |||||| || || |||| Sbjct 62747 ATCCTGTATCTTTGCCTTGACATTTTCAATAGTGTCTGATGGCTCGACCTCAAGGGTAAT 62806 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || || ||||| |||||||||||||| Sbjct 62807 GGTTTTACCCGTGAGGGTTTTCACAAAAATTTGCAT 62842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451656457045200