Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq5419 104 3e-17 seq254 84.2 3e-11 >seq5419 Length=38822 Score = 104 bits (114), Expect = 3e-17 Identities = 258/381 (68%), Gaps = 8/381 (2%) Strand=Plus/Plus Query 12690 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 12749 |||| |||| || || ||||| || || || || || ||| ||| ||||| || Sbjct 32384 ACGGGAATCTGCCGGTCGAAGCGGCCGGGACGCAGCAGCGCGGGGTCGAGGATGTCGGGA 32443 Query 12750 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTC 12809 ||||| ||||||||||||| | || ||| || || | ||||||| |||||||| | | Sbjct 32444 CGGTTGGTCGCCGCGATGAGGATGACGCCGGTGCGGTCACCGAAGCCGTCCATCTC-GAC 32502 Query 12810 AAG-AGTTGATTGATGGTTTGTTCACGTTCATCATTCGCG-GGCATACCACCCGCACTGC 12867 || || || |||| ||| || || ||||| || | || || | ||||||| | Sbjct 32503 GAGCAGCTGGTTGAGGGTCTGCTCGCGTTCGTCGTGACCGCCGCCGA-GGCCCGCACCAC 32561 Query 12868 GTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACA-CGGTTGATTTTCACGG 12926 | || ||| |||||||| || ||||| | ||| | ||| || || || | | | || Sbjct 32562 GCTGGCGACCCACGGCGTCGATCTCGTCCACGAAGATGATGCAGGGGCTGTTCTGCTTGG 32621 Query 12927 GCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAA 12986 | | || || | || ||||| | ||| |||||||| || |||||||| || || Sbjct 32622 CCTGC-TCGAACAGGTCGCGCACGCGGGAGGCGCCGACACCGACGAACATCTCGACGAAG 32680 Query 12987 TTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAG 13045 | | | ||| | || | || ||| || ||| | ||| || || | ||| || ||||| Sbjct 32681 TCCGAGCCGG-AGATGGTGAAGAACGGCACGCCCGCTTCGCCGGCCACGGCGCGCGCGAG 32739 Query 13046 GAGGGTCTTCCCCGTCCCTGG 13066 || ||||| || || || || Sbjct 32740 CAGCGTCTTACCGGTGCCGGG 32760 >seq254 Length=3229631 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 |||||||||| ||||| |||||||| |||| || || |||||||| || ||||||| Sbjct 2115752 CCTCGTCACGTGAGATCAGTTCATTGCTGAAGGTTAGTCCGGGCATGAGGCCACGCTTCT 2115811 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 127658 | | |||||| || | | || || ||||||||||| ||||| || ||||||| Sbjct 2115812 TGAGCCAGAAGATGGAAGCGAAGCTACCGGAGAAGAAGATACCCTCGACTGCAGCGAACG 2115871 Query 127659 CAAATAGACGCTCGGCAAA 127677 | | | |||||| |||| Sbjct 2115872 CTACAATACGCTCACCAAA 2115890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613036563289200