Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq154 161 2e-34 seq1475 111 4e-19 seq1481 89.7 1e-12 >seq154 Length=1683969 Score = 161 bits (178), Expect = 2e-34 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||||| |||||| | |||||| || ||||| || |||| ||||||||||| || ||| Sbjct 579053 TCGAAGTCGCAGGACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGT 578994 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||||||||||||||| ||||||||||| ||||||||||| ||| |||||| Sbjct 578993 ACGGCCATCTTCCAGCTGCTTTCCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGAATTCC 578934 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || || ||||| ||| || || | || || | || || || ||||| Sbjct 578933 TTCCTTATCTTGGATCTTGGCCTTAACATTCTCAATAGTATCAGATGGCTCAACTTCCAA 578874 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || || |||||||| || || || Sbjct 578873 GGTGATGGTTTTTCCTGTAAGGGTTTTCACGAAGATCTG 578835 Score = 150 bits (166), Expect = 4e-31 Identities = 167/220 (76%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||||| |||||| | |||||| || |||||||| |||| |||||||| | | || Sbjct 578825 TCGAAGTCGCAGGACCAAGTGGAGGGTTGACTCCTTCTGGATATTGTAGTCGGAGAGGGT 578766 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||||||||||||||||| || ||||||||||| ||||||||||| || |||||| Sbjct 578765 ACGGCCATCTTCCAGCTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGGGGAATTCC 578706 Query 199528 TTCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCA 199586 |||| || || || ||| || || ||| |||| ||| || | | || || |||| Sbjct 578705 TTCTTTATCTTGGAT-TTTGGCTTTTACGTTCTCGATGGTATCAGAAGGCTCAACTTCCA 578647 Query 199587 ACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | ||||| ||||| || || || || ||||| ||||| || Sbjct 578646 ATGTGATGGTCTTTCCTGTTAGGGTCTTCACGAAAATCTG 578607 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| |||| |||||| | |||||| ||||||||||| |||| ||||||||||| | || Sbjct 579790 TCGCAGTCGCAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGGGT 579731 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||||||||| || || ||||||||||| ||||||||||| ||| |||||| Sbjct 579730 ACGGCCATCTTCCAGCTGTTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGAATTCC 579671 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || || ||||| ||| || || | || || | || || || ||||| Sbjct 579670 TTCCTTATCTTGGATCTTGGCCTTAACATTCTCAATAGTATCGGATGGCTCAACTTCCAA 579611 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || || |||||||| || || || Sbjct 579610 GGTGATGGTTTTTCCTGTAAGGGTTTTCACGAAGATCTG 579572 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| |||| |||||| | |||||| || ||||| || |||| ||||||||||| || || Sbjct 580018 TCGTAGTCGCAGGACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGT 579959 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||||||||||| ||||| || ||||||||||| ||||||||||| ||| |||||| Sbjct 579958 ACGGCCATCTTCCAGTTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGAATTCC 579899 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || ||||| || ||| || || | ||| || | || || || ||||| Sbjct 579898 TTCCTTATCTTGAATTTTGGCCTTGACATTCTCAATGGTATCAGATGGCTCAACTTCCAA 579839 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || ||||| || | || ||||| ||||| || Sbjct 579838 AGTGATGGTTTTACCGGTCAATGTCTTCACGAAAATCTG 579800 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||||| |||||| | |||||| || |||||||| |||| ||||||||| | | || Sbjct 578597 TCGAAGTCGCAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGT 578538 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||||||||||| ||||| || ||||||||||| ||||||||||| ||| |||||| Sbjct 578537 ACGGCCATCTTCCAGTTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGAATTCC 578478 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || |||||||| ||| || || | ||| || | || || || || || Sbjct 578477 TTCCTTATCTTGAATCTTAGCCTTGACATTCTCAATGGTATCGGATGGCTCAACTTCTAA 578418 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || ||||| || | || ||||| || || || Sbjct 578417 AGTGATAGTTTTACCAGTCAATGTCTTCACGAAGATCTG 578379 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| |||| |||||| | |||||| || |||||||| |||| ||||||||||| | || Sbjct 580246 TCGCAGTCGCAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAGAGGGT 580187 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||||||||||||||| |||||||| || |||||||| || || |||||| Sbjct 580186 ACGGCCATCTTCCAGCTGCTTTCCAGCGAAGATAAGTCGCTGCTGATCTGGGGGAATTCC 580127 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || |||||||| ||| || || | ||| || | || || || ||||| Sbjct 580126 TTCCTTATCTTGAATCTTAGCCTTGACATTCTCAATGGTATCGGATGGCTCAACTTCCAA 580067 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || ||||| || | || ||||| || || || Sbjct 580066 AGTGATGGTTTTACCGGTCAATGTCTTCACGAAGATCTG 580028 Score = 123 bits (136), Expect = 6e-23 Identities = 101/123 (82%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| |||| |||||| | |||||| || |||||||| |||| ||||||||| | | || Sbjct 578369 TCGTAGTCGCAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGT 578310 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||||||||||||||| |||||||| || ||||||||||| ||| |||||| Sbjct 578309 ACGGCCATCTTCCAGCTGCTTTCCAGCGAAGATAAGTCGCTGCTGGTCTGGAGGAATTCC 578250 Query 199528 TTC 199530 ||| Sbjct 578249 TTC 578247 Score = 122 bits (134), Expect = 2e-22 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| | || || || || ||||| |||| ||||||||| | | || Sbjct 580473 CGAAGGCGAAGGACTAAATGAAGTGTAGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTT 580414 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || ||||||||||| |||||||| || ||||||||||| ||| ||||||| Sbjct 580413 CGGCCATCCTCAAGCTGCTTTCCAGCGAAGATAAGTCGCTGCTGGTCTGGAGGAATTCCT 580354 Query 199529 TCTCGCTCCTGAATCTTTTG-CTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || || |||| |||| | ||| || ||| | ||| || | || || || ||||| Sbjct 580353 TCCTTATCTTGAA-CTTTAGCCTTGACATTTTCAATGGTATCAGATGGCTCAACCTCCAA 580295 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || || ||||| ||||| || Sbjct 580294 GGTAATTGTCTTTCCTGTTAGGGTCTTCACGAAAATCTG 580256 Score = 89.7 bits (98), Expect = 1e-12 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 200934 ACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCA 200993 ||| |||||||| ||||||||| |||||||||| | ||| || | || |||||| |||| Sbjct 578957 ACTCATCTTCGCTGGAAAGCAGCTGGAAGATGGCCGTACTCTGTCTGACTACAACATCCA 579016 Query 200994 GAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 201030 ||||||||| || || ||| | || || |||||||| Sbjct 579017 GAAAGAGTCCACCCTCCACTTGGTCCTGCGACTTCGA 579053 >seq1475 Length=480095 Score = 111 bits (122), Expect = 4e-19 Identities = 130/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 199451 TTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGC 199510 |||||||||| | ||| | |||||||| | ||| || ||||| || || || |||||| Sbjct 62664 TTGTAGTCAGAGAGAGTACGCCCATCTTCTAACTGTTTACCGGCAAAAATCAGTCGCTGC 62723 Query 199511 TGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCT 199570 ||||| || ||||| || ||||| |||||| ||| || ||| | |||||| Sbjct 62724 TGGTCTGGGGGGATTCCCTCCTTATCCTGTATCTTTGCCTTGACATTTTCAATAGTGTCT 62783 Query 199571 GTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | || || || || | || || || ||||||||||| ||||||||||||||||| Sbjct 62784 GATGGCTCGACCTCAAGGGTAATGGTTTTACCCGTGAGGGTTTTCACAAAAATTTG 62839 >seq1481 Length=432034 Score = 89.7 bits (98), Expect = 1e-12 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| |||||||| || || ||||||||||| | |||||| |||| | || | ||||| Sbjct 222110 CAGCACAAGGTGAAGTGTGGACTCCTTTTGAATGTTGTAATCAGAAAGTGTGCGACCATC 222169 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||| ||| ||||| || || || | | ||||||||| || ||||||||| || Sbjct 222170 TTCCAACTGTTTTCCTGCAAAAATCAATCTCTGCTGGTCTGGGGGGATTCCTTCTTTGTC 222229 Query 199537 CTGAATCTTTTGCTTCACG 199555 || ||||| ||||||| Sbjct 222230 TTGGATCTTAGCCTTCACG 222248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177994610261790