Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1475 96.9 4e-15 seq1481 87.8 2e-12 seq154 86.0 7e-12 >seq1475 Length=480095 Score = 96.9 bits (106), Expect = 4e-15 Identities = 139/195 (71%), Gaps = 1/195 (1%) Strand=Plus/Plus Query 46404 CCTTT-TGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || ||||||||||| || ||||| ||| | || || | ||| || ||||| || Sbjct 62652 CCTTTCTGTATATTGTAGTCAGAGAGAGTACGCCCATCTTCTAACTGTTTACCGGCAAAA 62711 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| ||||||||||| | || | | |||||| ||| ||||| ||||| | Sbjct 62712 ATCAGTCGCTGCTGGTCTGGGGGGATTCCCTCCTTATCCTGTATCTTTGCCTTGACATTT 62771 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| | || || || | || |||||||| ||||| || ||||| ||| Sbjct 62772 TCAATAGTGTCTGATGGCTCGACCTCAAGGGTAATGGTTTTACCCGTGAGGGTTTTCACA 62831 Query 46583 AAGATTTGCATTTTG 46597 || |||||||| ||| Sbjct 62832 AAAATTTGCATGTTG 62846 >seq1481 Length=432034 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46406 TTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 46465 ||||| ||||||||||| || | || || | || || | |||||| ||||| || ||| Sbjct 233767 TTTTGAATATTGTAGTCCGACAACGTTCGGCCATCTTCTAACTGCTTCCCGGCAAAGATC 233826 Query 46466 AAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCC 46525 | ||||||||| || | || | | |||||||| |||||| ||| | || | Sbjct 233827 AGGCGCTGCTGATCAGGAGGAATCCCTTCCTTGTCTTGAATCTTCGCCTTAACATTCTCG 233886 Query 46526 ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAG 46585 | |||||| | || || |||| ||| || ||||| || || ||||| || ||||| Sbjct 233887 ATCGTGTCAGAGGGCTCTACCTCCAACGTAATCGTTTTTCCTGTGAGCGTCTTTACAAAA 233946 Query 46586 ATTTGCATTTT 46596 || ||||| || Sbjct 233947 ATCTGCATGTT 233957 >seq154 Length=1683969 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || ||||| |||||||| || ||||| || | || || |||||||| || ||||| Sbjct 579023 CTCTTTCTGGATGTTGTAGTCAGACAGAGTACGGCCATCTTCCAGCTGCTTTCCAGCGAA 578964 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | ||||| || |||||| ||| | | Sbjct 578963 GATGAGTCGCTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGGATCTTGGCCTTAACATT 578904 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || || | || || |||| ||||||||||| || || || ||||| || Sbjct 578903 CTCAATAGTATCAGATGGCTCAACTTCCAAGGTGATGGTTTTTCCTGTAAGGGTTTTCAC 578844 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 578843 GAAGATCTGCAT 578832 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || || || | || || ||||| || || ||||| Sbjct 579760 CTCCTTCTGGATGTTGTAGTCAGAGAGGGTACGGCCATCTTCCAGCTGTTTACCAGCGAA 579701 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | ||||| || |||||| ||| | | Sbjct 579700 GATGAGTCGCTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGGATCTTGGCCTTAACATT 579641 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || ||| | || || |||| ||||||||||| || || || ||||| || Sbjct 579640 CTCAATAGTATCGGATGGCTCAACTTCCAAGGTGATGGTTTTTCCTGTAAGGGTTTTCAC 579581 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 579580 GAAGATCTGCAT 579569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564804791492400