Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq254 161 1e-34 seq154 134 1e-26 >seq254 Length=3229631 Score = 161 bits (178), Expect = 1e-34 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 ||||||| | || || ||||| |||||||| || | |||||||||||||| || || | Sbjct 2115752 CCTCGTCACGTGAGATCAGTTCATTGCTGAAGGTTAGTCCGGGCATGAGGCCACGCTTCT 2115811 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 ||||||| || |||| ||||| || || || ||||||| |||||||| || ||||| | Sbjct 2115812 TGAGCCAGAAGATGGAAGCGAAGCTACCGGAGAAGAAGATACCCTCGACTGCAGCGAACG 2115871 Query 133037 CCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGG 133096 | || | ||||| || ||||| || | |||||||||||| ||| ||||| || | Sbjct 2115872 CTACAATACGCTCACCAAACGTTGCGGTCTCGCTGGCGATCCACTGCAATGCCCAATCAG 2115931 Query 133097 CCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACA 133138 | || ||||| || ||||| |||||||||||||| |||| Sbjct 2115932 CTTTGCGCTTGACACAGGGCATTGTTTCGATGGCGTTGAACA 2115973 Score = 105 bits (116), Expect = 7e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 133382 CCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATAC 133441 |||| || || ||||||||||| | ||||| ||||| ||||| || || |||||||| Sbjct 2122673 CCTTAGAGAGATCCACCTCCTCAGCTGTCCAGAACGAGGCCTCTGCCTTCTTGTACATTT 2122732 Query 133442 TCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACA 133501 |||| ||||| ||||| || || || | ||| || | ||| ||||| || ||||||| Sbjct 2122733 TCCAGATGTCATGATATTCAATAGGGAACACCACGAATCTGCGTGGGTTCTCACGCAACA 2122792 Query 133502 GCGGCTCCGCTTGGGGGTCGAAC 133524 | |||||| |||||||| ||| Sbjct 2122793 GTGGCTCCAGCTGGGGGTCAAAC 2122815 >seq154 Length=1683969 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| || || || |||||||||||| | || || ||| | || Sbjct 579569 ATGCAGATCTTCGTGAAAACCCTTACAGGAAAAACCATCACCTTGGAAGTTGAGCCATCC 579628 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | |||| | || |||| || || || |||||||| | ||||| Sbjct 579629 GATACTATTGAGAATGTTAAGGCCAAGATCCAAGATAAGGAAGGAATTCCTCCAGACCAG 579688 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | ||| || ||||||||||| || | || |||||| ||||||||| Sbjct 579689 CAGCGACTCATCTTCGCTGGTAAACAGCTGGAAGATGGCCGTACCCTCTCTGACTACAAC 579748 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| |||| || || ||||| ||||| || |||| || Sbjct 579749 ATCCAGAAGGAGTCGACCCTCCACTTGGTCCTGCGACTGCGAGGAGG 579795 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| || || || |||||||||||| | || || ||| | | Sbjct 578832 ATGCAGATCTTCGTGAAAACCCTTACAGGAAAAACCATCACCTTGGAAGTTGAGCCATCT 578891 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | |||| | || |||| || || || |||||||| | ||||| Sbjct 578892 GATACTATTGAGAATGTTAAGGCCAAGATCCAAGATAAGGAAGGAATTCCTCCAGACCAG 578951 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | ||| || || |||||||| || | || || || ||||||||| Sbjct 578952 CAGCGACTCATCTTCGCTGGAAAGCAGCTGGAAGATGGCCGTACTCTGTCTGACTACAAC 579011 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| || || | || || || ||||| ||||| Sbjct 579012 ATCCAGAAAGAGTCCACCCTCCACTTGGTCCTGCG 579046 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || || ||||||||||| | || || ||| | || Sbjct 580025 ATGCAGATCTTCGTGAAGACATTGACCGGTAAAACCATCACTTTGGAAGTTGAGCCATCC 580084 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | || || | || || || ||||||||| | || || Sbjct 580085 GATACCATTGAGAATGTCAAGGCTAAGATTCAAGATAAGGAAGGAATTCCCCCAGATCAG 580144 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| || || |||||||| || | || |||||| ||||||||| Sbjct 580145 CAGCGACTTATCTTCGCTGGAAAGCAGCTGGAAGATGGCCGTACCCTCTCTGACTACAAC 580204 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| | || || || ||||| ||||| || |||| || Sbjct 580205 ATCCAGAAGGAGTCAACCCTCCACTTGGTCCTGCGACTGCGAGGAGG 580251 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || || ||||| ||||| | || || ||| | || Sbjct 578376 ATGCAGATCTTCGTGAAGACATTGACTGGTAAAACTATCACTTTAGAAGTTGAGCCATCC 578435 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | || || | || || || |||||||| | ||||| Sbjct 578436 GATACCATTGAGAATGTCAAGGCTAAGATTCAAGATAAGGAAGGAATTCCTCCAGACCAG 578495 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | ||| || || || ||||| || | || |||||| |||||||||| Sbjct 578496 CAGCGACTCATCTTCGCTGGTAAGCAACTGGAAGATGGCCGTACCCTCTCCGACTACAAC 578555 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || || || ||||| ||||| Sbjct 578556 ATCCAGAAGGAGTCAACCCTCCACTTGGTCCTGCG 578590 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || || ||||||||||| | || || ||| | | Sbjct 579797 ATGCAGATTTTCGTGAAGACATTGACCGGTAAAACCATCACTTTGGAAGTTGAGCCATCT 579856 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | ||||| | || || || |||||||| | ||||| Sbjct 579857 GATACCATTGAGAATGTCAAGGCCAAAATTCAAGATAAGGAAGGAATTCCTCCAGACCAG 579916 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | ||| || || || ||||| || | || ||||| ||||||||| Sbjct 579917 CAGCGACTCATCTTCGCTGGTAAGCAACTGGAAGATGGCCGTACCCTGTCTGACTACAAC 579976 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| || || | || || || ||||| ||||| Sbjct 579977 ATCCAGAAAGAGTCCACCCTCCACTTGGTCCTGCG 580011 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 38340 AAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGAC 38399 || || |||||||| | ||||| ||||| || || | ||| || || |||||||| || Sbjct 578244 AAGGAAGGAATTCCTCCAGACCAGCAGCGACTTATCTTCGCTGGAAAGCAGCTGGAAGAT 578303 Query 38400 GAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 | || |||||| ||||||||||||||| ||||| | || || || ||||| ||||| Sbjct 578304 GGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCAACCCTCCACTTGGTCCTGCG 578362 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || || || || ||| | || || ||| | | Sbjct 580253 ATGCAGATTTTCGTGAAGACCCTAACAGGAAAGACAATTACCTTGGAGGTTGAGCCATCT 580312 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | ||| | || | ||| | | || || || |||||||| | ||||| Sbjct 580313 GATACCATTGAAAATGTCAAGGCTAAAGTTCAAGATAAGGAAGGAATTCCTCCAGACCAG 580372 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| || || ||||| || || | || ||||| ||||||||| Sbjct 580373 CAGCGACTTATCTTCGCTGGAAAGCAGCTTGAGGATGGCCGAACCCTTTCGGACTACAAC 580432 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| |||||| | || || ||||| || || || Sbjct 580433 ATCCAGAAGGAATCTACACTTCATTTAGTCCTTCG 580467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499789104940800