Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq811 102 1e-16 seq254 93.3 5e-14 >seq811 Length=1020237 Score = 102 bits (112), Expect = 1e-16 Identities = 330/505 (65%), Gaps = 22/505 (4%) Strand=Plus/Plus Query 15879 ATCTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTC 15938 |||| || ||||| ||||| || | ||| || || ||| |||| || || || Sbjct 412007 ATCTGTCGGTCAAAACGACCAGGTCTAAGTAGTGCTGGATCTAGGACGTCTGGACGGTTA 412066 Query 15939 GTTGCGGCGATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAA 15995 ||||| || | | | | |||| || ||| || |||||||||||||| || Sbjct 412067 GTTGCAGCAACTATTATCACACCT---TCATTAGACTCGAAACCATCCATCTCAACCAGT 412123 Query 15996 AGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA-TACCACCAGCACTGCGTTG 16054 | |||||| | |||||||||| ||| || || | | || | ||| | ||| || Sbjct 412124 AACTGGTTTAATGTTTGTTCCCTTTCGTCGTT-ACCGCCACCAAGACCGATGCCGCGATG 412182 Query 16055 CTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGC--- 16111 | | ||||| ||||| || || || ||||| | || || || ||||| | || Sbjct 412183 CCTACCCACCGCATCTATTTCGTCTATGAAAATTATACAAGGAGCATTTT-TCTTGCCTT 412241 Query 16112 GACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTT 16171 || ||||| | |||||| ||||| | || || ||||| |||||||| || || || | Sbjct 412242 GA--TCAAACATATCCCGGACACGGCTTGCACCAACACCGACAAACATTTCAACGAAATC 412299 Query 16172 TGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAG 16231 | | ||| | || || ||||||| |||||| ||||| || || || || || Sbjct 412300 AGATCCAGAAATACTAAAAAACGGTACATTAGCTTCACCTGCAATTGCACGAGCAAGTAG 412359 Query 16232 AGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGC---- 16287 ||| ||||| || || || ||| | || ||| ||| ||||| | | Sbjct 412360 AGTTTTACCAGTTCCAGGGGAACCAATTAAAAGACATCCTTTTGGTATCTTCCCACCTAA 412419 Query 16288 CACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTCTTCCAATTCATCTT 16347 ||||| || | | || ||| ||||||||||| ||||| || |||| || |||| Sbjct 412420 CACTTGAAATTTTTGCCT----TTGTTTAAGAAAATCAACAATTTCAACCAACTCTTCTT 412475 Query 16348 TGGCGGCGTCAATCCCCTCAACATC 16372 | || | |||||||| ||||||| Sbjct 412476 TTGCTTCATCAATCCCAGCAACATC 412500 >seq254 Length=3229631 Score = 93.3 bits (102), Expect = 5e-14 Identities = 151/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 102099 GCCATCCAAACAGTTCCATGTATTCAAAAG-AAAGCGGATTGGGCTATGAAGTGGTTTGA 102157 |||||| ||||| | || ||| | ||| | ||||| |||||||| || ||||| | | Sbjct 2115965 GCCATCGAAACAATGCCCTGTGT-CAAGCGCAAAGCTGATTGGGCATTGCAGTGGATCGC 2115907 Query 102158 TACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTT 102217 | || | | |||| |||||| | | || || || || ||||||||||| Sbjct 2115906 CAGCGAGACCGCAACGTTTGGTGAGCGTATTGTAGCGTTCGCTGCAGTCGAGGGTATCTT 2115847 Query 102218 CTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCT 102277 |||||| ||| |||| | || | |||||||||||||| || |||||||| || || Sbjct 2115846 CTTCTCCGGTAGCTTCGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGACT 2115787 Query 102278 CTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGG 102312 |||| ||| || || ||||| |||||||||| Sbjct 2115786 AACCTTCAGCAATGAACTGATCTCACGTGACGAGG 2115752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620266212986400