Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq5419 102 1e-16 >seq5419 Length=38822 Score = 102 bits (112), Expect = 1e-16 Identities = 313/474 (66%), Gaps = 10/474 (2%) Strand=Plus/Plus Query 11495 GAATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGT 11554 |||||| || ||||| || || || || || || || || || || ||| ||||| Sbjct 32388 GAATCTGCCGGTCGAAGCGGCCGGGACGCAGCAGCGCGGGGTCGAGGATGTCGGGACGGT 32447 Query 11555 TTGTAGCGGCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAA 11614 | || || || |||| | | ||| || | |||| |||||||| || ||| | Sbjct 32448 TGGTCGCCGCGATGAGGATGACGCCGGTGCGGTCACCGAAGCCGTCCATCTCGACGAGCA 32507 Query 11615 GCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCA--CCTGCCGAACGCTT 11672 ||||||||| ||||| || || || |||| || || | | || || ||||| Sbjct 32508 GCTGGTTGAGGGTCTGCTCGCGTTCGTCGT--GACCGCCGCCGAGGCCCGCACCACGCTG 32565 Query 11673 CTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTG-GCACGTGCCT 11731 ||| || ||||| ||||| || | ||| | ||| || || ||| || | |||| Sbjct 32566 GCGACCCACGGCGTCGATCTCGTCCACGAAGATGATGCAGGGGCTGTTCTGCTTG-GCCT 32624 Query 11732 GTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG 11791 | ||||| || || || || || || || ||||| ||||||||||| ||||||| | Sbjct 32625 GCTCGAACAGGTCGCGCACGCGGGAGGCGCCGACACCGACGAACATCTCGACGAAGTCCG 32684 Query 11792 CGGCAGA-ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGA 11850 | | || | |||| ||| || || | || || || | ||| || ||||| || Sbjct 32685 AGCCGGAGATGGTGAA-GAACGGCACGCCCGCTTCGCCGGCCACGGCGCGCGCGAGCAGC 32743 Query 11851 GTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTT 11910 |||||||| || || || | || ||| || |||| || |||||||| || || | Sbjct 32744 GTCTTACCGGTGCCGGGCGGGCCGTAGAGCAGCACGCCGCGAGGGATCTTCGCGCC-CAG 32802 Query 11911 CCA-AAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTC 11963 | | ||| || | || |||| ||||||||| ||||| | || ||||| Sbjct 32803 CGACTGGTACCGGACCGGGTTCTGCAGGAAGTCCTTGATCTCGTAGAGCTCCTC 32856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588524181786000