Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq154 154 3e-32 seq1481 127 5e-24 >seq154 Length=1683969 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| || || | ||| || || ||||| || || |||||||| |||| || || | Sbjct 578821 AGTCGCAGGACCAAGTGGAGGGTTGACTCCTTCTGGATATTGTAGTCGGAGAGGGTACGG 578762 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| ||||||||||| |||||||| ||||| || |||||||| ||||| |||||| Sbjct 578761 CCATCTTCCAGCTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGGGGAATTCCTTCT 578702 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || ||||| ||||| || |||||||| ||||| || ||| || ||||| | || Sbjct 578701 TTATCTTGGATTTTGGCTTTTACGTTCTCGATGGTATCAGAAGGCTCAACTTCCAATGTG 578642 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||||||||| | || || ||||| | ||||| Sbjct 578641 ATGGTCTTTCCTGTTAGGGTCTTCACGAAAATCTGCAT 578604 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| || || | ||| || ||||||||||| || || ||||| || | || || | Sbjct 580014 AGTCGCAGGACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGG 579955 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || |||||||| |||||||| ||||| || |||||||||||||| ||||| Sbjct 579954 CCATCTTCCAGTTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGAATTCCTTCC 579895 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || ||||||||||| |||||| ||||||||||| || || || ||||| | || Sbjct 579894 TTATCTTGAATTTTGGCCTTGACATTCTCAATGGTATCAGATGGCTCAACTTCCAAAGTG 579835 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || || ||||| || || ||||| | ||||| Sbjct 579834 ATGGTTTTACCGGTCAATGTCTTCACGAAAATCTGCAT 579797 Score = 150 bits (166), Expect = 4e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| || || | ||| || ||||||||||| || || ||||| || | ||||| | Sbjct 579049 AGTCGCAGGACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGG 578990 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| |||||||| || |||||||| ||||| || |||||||||||||| ||||| Sbjct 578989 CCATCTTCCAGCTGCTTTCCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGAATTCCTTCC 578930 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || ||||| || || ||| || |||||||| || || || || ||||| | ||| Sbjct 578929 TTATCTTGGATCTTGGCCTTAACATTCTCAATAGTATCAGATGGCTCAACTTCCAAGGTG 578870 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || |||||||| | ||||| ||||| | ||||| Sbjct 578869 ATGGTTTTTCCTGTAAGGGTTTTCACGAAGATCTGCAT 578832 Score = 150 bits (166), Expect = 4e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| || || || || || || ||||| || | ||| |||| ||||| || |||||| Sbjct 580455 TGAAGTGTAGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTTCGGCCATCCTCAAGCTGC 580396 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || |||||||||||||| || |||||||||||||| ||||| || ||||||| ||| Sbjct 580395 TTTCCAGCGAAGATAAGTCGCTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGAACTTTA 580336 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 |||||| || |||||||| || || || || || | ||||| ||||||||||| Sbjct 580335 GCCTTGACATTTTCAATGGTATCAGATGGCTCAACCTCCAAGGTAATTGTCTTTCCTGTT 580276 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | ||||| Sbjct 580275 AGGGTCTTCACGAAAATCTGCAT 580253 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| || || | ||| || || ||||| || || || ||||| |||| || || | Sbjct 578593 AGTCGCAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGG 578534 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || |||||||| |||||||| ||||| || |||||||||||||| ||||| Sbjct 578533 CCATCTTCCAGTTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGAATTCCTTCC 578474 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || |||||||| || |||||| ||||||||||| || || || ||||| | || Sbjct 578473 TTATCTTGAATCTTAGCCTTGACATTCTCAATGGTATCGGATGGCTCAACTTCTAAAGTG 578414 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || || ||||| || || ||||| | ||||| Sbjct 578413 ATAGTTTTACCAGTCAATGTCTTCACGAAGATCTGCAT 578376 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| || || | ||| || || ||||| || || || ||||| || | || || | Sbjct 579786 AGTCGCAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTACGG 579727 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| ||||| ||||| |||||||| ||||| || |||||||||||||| ||||| Sbjct 579726 CCATCTTCCAGCTGTTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGAATTCCTTCC 579667 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || ||||| || || ||| || |||||||| || || || || ||||| | ||| Sbjct 579666 TTATCTTGGATCTTGGCCTTAACATTCTCAATAGTATCGGATGGCTCAACTTCCAAGGTG 579607 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || |||||||| | ||||| ||||| | ||||| Sbjct 579606 ATGGTTTTTCCTGTAAGGGTTTTCACGAAGATCTGCAT 579569 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| || || | ||| || || ||||| || || || ||||| || | || || | Sbjct 580242 AGTCGCAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTACGG 580183 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| |||||||| || |||||||||||||| || || ||||| ||||| ||||| Sbjct 580182 CCATCTTCCAGCTGCTTTCCAGCGAAGATAAGTCGCTGCTGATCTGGGGGAATTCCTTCC 580123 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || |||||||| || |||||| ||||||||||| || || || ||||| | || Sbjct 580122 TTATCTTGAATCTTAGCCTTGACATTCTCAATGGTATCGGATGGCTCAACTTCCAAAGTG 580063 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || || ||||| || || ||||| | ||||| Sbjct 580062 ATGGTTTTACCGGTCAATGTCTTCACGAAGATCTGCAT 580025 Score = 104 bits (114), Expect = 5e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| || || | ||| || || ||||| || || || ||||| |||| || || | Sbjct 578365 AGTCGCAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGG 578306 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| |||||||| || |||||||||||||| || |||||||||||||| ||||| Sbjct 578305 CCATCTTCCAGCTGCTTTCCAGCGAAGATAAGTCGCTGCTGGTCTGGAGGAATTCCTTCC 578246 Query 195043 TT 195044 || Sbjct 578245 TT 578244 >seq1481 Length=432034 Score = 127 bits (140), Expect = 5e-24 Identities = 127/165 (77%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || ||||||||||| |||||||| |||||||| |||||||| | ||| || Sbjct 222101 TCTCAGACGCAGCACAAGGTGAAGTGTGGACTCCTTTTGAATGTTGTAATCAGAAAGTGT 222160 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| | ||| || ||||| || || | || || |||||||| || || || Sbjct 222161 GCGACCATCTTCCAACTGTTTTCCTGCAAAAATCAATCTCTGCTGGTCTGGGGGGATTCC 222220 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGA 195083 |||||||||||| || || ||| ||||| ||||| || || || Sbjct 222221 TTCTTTGTCTTGGATCTTAGCCTTCACGTTTTCAATTGTATCAGA 222265 Score = 122 bits (134), Expect = 2e-22 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010 |||||||||||||||| || | | |||| |||||||| | |||||| || || |||| Sbjct 233765 CTTTTTGAATATTGTAGTCCGACAACGTTCGGCCATCTTCTAACTGCTTCCCGGCAAAGA 233824 Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCT 195070 | || || || || || |||||||| ||||| ||||||||||| || ||| || |||| Sbjct 233825 TCAGGCGCTGCTGATCAGGAGGAATCCCTTCCTTGTCTTGAATCTTCGCCTTAACATTCT 233884 Query 195071 CAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGA 195130 | || ||||| || || || || | |||| ||| |||||||| | || ||||| | Sbjct 233885 CGATCGTGTCAGAGGGCTCTACCTCCAACGTAATCGTTTTTCCTGTGAGCGTCTTTACAA 233944 Query 195131 ACACTTGCAT 195140 | | ||||| Sbjct 233945 AAATCTGCAT 233954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108609211150790