Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq154 113 3e-20 >seq154 Length=1683969 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 || || |||| ||| ||| ||||| ||||| |||||||||||| |||| |||| || Sbjct 580461 ACTAAATGAAGTGTAGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTTCGGCCATCCTCA 580402 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| ||||| || || || ||||| ||||||||| | || | || ||||| || | Sbjct 580401 AGCTGCTTTCCAGCGAAGATAAGTCGCTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGA 580342 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 | || ||||| | | || | ||| | |||||| || | ||| || || ||| Sbjct 580341 ACTTTAGCCTTGACATTTTCAATGGTATCAGATGGCTCAACCTCCAAGGTAATTGTCTTT 580282 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || |||||||| || ||||||||| Sbjct 580281 CCTGTTAGGGTCTTCACGAAAATCTGCATA 580252 Score = 111 bits (122), Expect = 1e-19 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| |||||||| ||||| ||||| || || | || |||| ||| Sbjct 579040 ACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGGCCATCTTCC 578981 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| ||||| || || || ||||| ||||||||| | || | || ||||| || Sbjct 578980 AGCTGCTTTCCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGG 578921 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| || || || || || | ||| | |||||| || | ||| ||||||| Sbjct 578920 ATCTTGGCCTTAAC--ATTCTCAATAGTATCAGATGGCTCAACTTCCAAGGTGATGGTTT 578863 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 |||| || || || ||||| |||||||||||| Sbjct 578862 TTCCTGTAAGGGTTTTCACGAAGATCTGCATA 578831 Score = 98.7 bits (108), Expect = 6e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| | || | || |||||||| | || || ||||| ||||| ||||| || Sbjct 580251 CCTCCTCGCAGTCGCAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAG 580192 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| |||||||| ||||| || || || ||||| ||||| ||| | || Sbjct 580191 AGGGTACGGCCATCTTCCAGCTGCTTTCCAGCGAAGATAAGTCGCTGCTGATCTGGGGGA 580132 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | || ||||| || |||||| ||||| || || || | || | ||||| Sbjct 580131 ATTCCTTCCTTATCTTGAATCTTAGCCTTGAC--ATTCTCAATGGTATCGGATGGCTCAA 580074 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || | || |||||||| || || | |||||||| |||||||||||| Sbjct 580073 CTTCCAAAGTGATGGTTTTACCGGTCAATGTCTTCACGAAGATCTGCATA 580024 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| ||||| ||||| || ||| | || |||| ||| Sbjct 578584 ACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCTTCC 578525 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || || || || || || ||||| ||||||||| | || | || ||||| || | Sbjct 578524 AGTTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGA 578465 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | || | |||||| || | || || |||| Sbjct 578464 ATCTTAGCCTTGAC--ATTCTCAATGGTATCGGATGGCTCAACTTCTAAAGTGATAGTTT 578407 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || || | |||||||| |||||||||||| Sbjct 578406 TACCAGTCAATGTCTTCACGAAGATCTGCATA 578375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324390791313360