Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_016651.1 Length=14270 Score E Sequences producing significant alignments: (Bits) Value seq6786 174 1e-39 >seq6786 Length=20090 Score = 174 bits (192), Expect = 1e-39 Identities = 731/1146 (64%), Gaps = 91/1146 (8%) Strand=Plus/Plus Query 2741 CCCCGCTGGATCGACCGGACGAACGGGCCGATCTCGCCCTATCACCGCATGTTGTGGACG 2800 |||| ||| ||||||| ||| |||| ||| | || || | || || ||| || || Sbjct 5248 CCCCTGTGGCTCGACCGCACGGACGGCCCGGTGTCCCCGTTCCATCGGATGCTGCTCACC 5307 Query 2801 GTCGACGACCTGCTGTTCTACGGCTGGTCGTGCTGGGCGTGTCGA-CGCGACACCGACGG 2859 |||||||||| | ||| |||||| || |||||| ||||| |||||| | ||| Sbjct 5308 TGCGACGACCTGTTCTTCCACGGCTACTCCGCGTGGGCG-GTCGAACGCGACGGCTCCGG 5366 Query 2860 CGTCGTGATCGAGGCGGACCGGATCCCCTGGGAACAGTGGCGGATCAACCAGGAC-ACCG 2918 |||||| ||| || ||||| ||||| | || | ||| || | | | | | || Sbjct 5367 CGTCGTCGTCGCCGCCGACCGAATCCCGTTCGAGGACTGG----TCCATCGGTGCGAACG 5422 Query 2919 GCGCCGTCGAATACGCCGTCGGCACCGAAACGTGGTCGCCGGTCGACGCCGACTCCGTGA 2978 || |||| ||| || || ||||| |||||||||| ||| || | Sbjct 5423 GCCGCGTCCTGTAC--CG-CGAGACCGA------------GGTCGACGCCCGCTCGGTCA 5467 Query 2979 TCGTCATTCCGGGATCGCATGAGGGGATCCTCACCGACGC--CGACACGACGATCCGCCA 3036 ||||||| || || | || || ||||| | | || |||| | |||||||||| Sbjct 5468 TCGTCATCCCCGGCGAGTCCGAAGGCATCCTGAACTTCGGATCGACCC--CGATCCGCCA 5525 Query 3037 CGCCCGCGATCTGATCGCGAACGCCGCGAAAGCGACCGAGAACCCGTCCGCCTACATCGA 3096 ||||||||| || ||| | |||| || || || || ||| || || || || Sbjct 5526 CGCCCGCGACCTCGCCGCCGCCACCGCCAAGGCCGCCACGACACCGGCCACCAACGTCCT 5585 Query 3097 GTTGCACCAGACGAACGACGTCCCGATGACCGACCGGGAAATCGACGCCCTGGTCGATCG 3156 | | | ||||| | | ||| ||||| | | | | | ||| | || || Sbjct 5586 GCTCAAGCAGACCTCGGGTGACCCACTGACCCGCGAGAAGGCCAAGGCCATCGTGGACGA 5645 Query 3157 TTGGGTCGCGGCCCGCCGGGGCGACAACGGCGGGGTTGCGTTCACCA--GC-----TC-- 3207 | || |||| ||||| | | | || |||||| ||||| || || || Sbjct 5646 CTACGTGTCGGCTCGCCGCGAGGCCGACCACGGGGTGTCGTTCGCCTCGGCCAACATCGA 5705 Query 3208 CGGCGTCGAGGTCCGCGAACACGGCGCCCCCCTCGAACAGCTGCTGATCGAGGGCCGCAA 3267 || | |||||| | || ||| || |||| || ||| | ||||| |||||||| Sbjct 5706 CGTCATCGAGGCCGGCAAACGCGA-GCCCGCC--------CTGTTCATCGACGGCCGCAA 5756 Query 3268 CGCCNNNNNNNNNNNNNNNGCCCGGGCGTGTGGGATCCCCGCAACGCTGCTGGACGCGAC 3327 |||| ||||| | || | || || | ||||| ||||| | Sbjct 5757 CGCCGCCGCCGTCGATATCGCCCGCCTGACCGGCGTGCCGGCGTCCCTGCTCGACGCCGC 5816 Query 3328 CGCGCCCGTCGCGTCCCTGAACTACCAGAACAGCAACACCAAAAATCGCGAGTTGGTCGA 3387 | | |||| || ||| ||| |||| |||||| | | |||||| | ||| || |||| Sbjct 5817 CACCCCCGGCGGGTCGATGACCTACAAGAACACCGAGGCCAAAATCCAGGAGCTGATCGA 5876 Query 3388 CTACGGTCTGTCCGCCTACACGCTCCCGATCAGTGCCCGTCTGGGCATGGACGACGTCGT 3447 || || || || |||||| | | | | ||||| || || ||||||||| | || Sbjct 5877 CTTCGCCCTCGCCCCCTACATGTCCGCCGTGGCCGCCCGCCTCGGGATGGACGACATGGT 5936 Query 3448 TCCCCGCGGGTG-GCGGATCGGGTTCGACATGGACGGGTTCaccggcgc------cgacg 3500 || || |||| ||| |||| |||||||| || | ||||||| ||||| Sbjct 5937 GCCG-GCCGGTGTGCGCATCGAGTTCGACACCACCGTCCTGACCGGCGTGGCCGGCGACG 5995 Query 3501 c---------ccccgacgaccgcgatcccgccgaaccgaccgtgaaccgtccgacgtccg 3551 | |||||||||| || |||||| |||||| | | ||||| ||||| Sbjct 5996 CGGTGTCCGTCCCCGACGACGGCCCCGCCGCCGCGCCGACCCCG--CTGTCCGCCGTCC- 6052 Query 3552 tAGCGCCCGCCGATCCTCGAGAGGACACCGCCGCATGAGCTTCCGGACCGCCTACGGCCA 3611 ||| || |||| ||| ||| | | || ||| | |||| Sbjct 6053 ----------CGAACC----GAGGT----GCCTGATGCGTTACCCCACCCGCCCCGGCG- 6093 Query 3612 TTCCCACTCGGAGAACGGGTGGCGGATGTGCAACCACGACGAAACCGTGACCGTGAAAGT 3671 |||| || |||||||| |||| |||| || | | || ||||| || ||| |||| Sbjct 6094 -TCCCG-TCCGAGAACGGCTGGCCGATGATCACCTCGGCCGGCACCGTCACGGTGGAAGT 6151 Query 3672 GGTCCCGGGGTCCGTCGGCGCCCCGATCCGCCGGGGCGCCCCCGCGACGATCCTCAACGC 3731 ||| |||| || ||| |||| |||| || ||| | ||| |||||||||||||| Sbjct 6152 GGTGCCGGCCGCCAAGCGCGTCCCGCTCCGGCGCGGCCCGGTCGCCACGATCCTCAACGC 6211 Query 3732 CTGGTTGATCGAATACGACCGGCACGTCGAACCGATCACATCCCAGGTGTGGGGCT---G 3788 |||| | || | ||| |||||||| |||| || ||| || ||||||||||||| | Sbjct 6212 CTGGATTCTCTACTACCACCGGCACATCGAGCCCATCCGTTCGCAGGTGTGGGGCTACAG 6271 Query 3789 GTCGAGGGACAACGACGTCGCGAACAGTAACCACCTCGCCGGGACCGCCGTCGACATCAA 3848 || ||||||||||| |||||||| |||||| | |||| |||||| ||||||| | Sbjct 6272 CTC---CGACAACGACGTGGCGAACAGCAACCACATGTCCGGCACCGCCATCGACATTCA 6328 Query 3849 CGCCCC 3854 |||||| Sbjct 6329 CGCCCC 6334 Score = 129 bits (142), Expect = 5e-26 Identities = 229/324 (71%), Gaps = 14/324 (4%) Strand=Plus/Plus Query 5677 GTGGATCGGCGAACTCTGGTCCGGGGTGACCTACCAGCGCCGGATCGTTCCGCTTCTCGG 5736 |||| |||| || || |||||||| ||| ||||||||||||| ||| | || || || Sbjct 8538 GTGGCTCGGTGAGCTGTGGTCCGGCGTGGCCTACCAGCGCCGCATCATCCCCCTGCTGAC 8597 Query 5737 ATCCCGGGCGCT--CACGTCG--TGGCGGATCCAGGGGTTCACGTGGACCACGAAACCCG 5792 ||||| |||| | || || ||||| || || | | |||| || || ||| Sbjct 8598 CACCCGGCCGCTGACCCGGCGCAAGGCGG-TC---GGCTACCGCTGGAAGACCAAGCCCA 8653 Query 5793 CCGTCGCCGCCTACGCCGGGAACAAAGCGGAGATTCCGAGCAACCAGCCCGCGATCGCCC 5852 | |||| |||||||| ||||| | || ||||||| | || | | || || | Sbjct 8654 CGGTCGAGAAGTACGCCGGCAACAAGACCGACATTCCGACCGGCCCGGTGGAGACCGAAC 8713 Query 5853 CGTATGAGAGCGAAG--CGACCCGGTGGGCCGGTGGTCACGACCTCGACCGGAAGTTCTA 5910 | |||| || | ||| ||||||||||| ||||||||| ||||||| ||||| Sbjct 8714 AGGTGGAGA-TGACGGCCGA-GCGGTGGGCCGGCGGTCACGACATCGACCGCGCGTTCTT 8771 Query 5911 CGACTTCCGCGACACCGCGTTCCTCGAAAG-CTACTGGCGCGCAATGGCAGAGAGCTACG 5969 ||||||| |||||||| |||||| ||| | ||||||| ||| ||| |||||||||| Sbjct 8772 CGACTTCAACGACACCGAGTTCCT-GAACGCCTACTGGGCCGCGATGAACGAGAGCTACG 8830 Query 5970 CCCGGGTGACCGACGCCGCCGCCG 5993 || || ||||||| || ||||| Sbjct 8831 CCGAGGAGACCGACCTCGACGCCG 8854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 45513281269230