Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_016655.1 Length=51342 Score E Sequences producing significant alignments: (Bits) Value seq6786 113 1e-20 seq21069 91.5 5e-14 >seq6786 Length=20090 Score = 113 bits (124), Expect = 1e-20 Identities = 94/115 (82%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 40272 CAACATCGCGATGAGCGCCAACCCGATCGGCCTGATCATCATCGCCATCGGCGCTCTGGT 40331 ||||||||| ||| ||||||||| ||||||||| || |||||||| ||| ||||||||| Sbjct 12580 CAACATCGCCCTGACCGCCAACCCCATCGGCCTGGTCGTCATCGCCGTCGCCGCTCTGGT 12639 Query 40332 GGCAGCGATCGTATGGCTCGCGACCAAGACTCAGTTCTTCCAGACCGTCTGGGAG 40386 || | ||||| | ||||| || |||| ||||||||||||||||| ||| || Sbjct 12640 CGCCGGCATCGTCTATCTCGCCACTCAGACGCAGTTCTTCCAGACCGTGTGGCAG 12694 >seq21069 Length=9268 Score = 91.5 bits (100), Expect = 5e-14 Identities = 108/147 (73%), Gaps = 6/147 (4%) Strand=Plus/Minus Query 26212 CTCGGCCTCGTCTCCGCTGTCGCAGGCACTCCGGCCGCGTCGGCGCACGACTGGTCCGGA 26271 ||||| |||| | ||| ||||||| ||||| || | ||| ||||| ||| Sbjct 3743 CTCGGACTCGCCACCGGAACCGCAGGC------GCCGCACCGACCCACAACTGGGACGGC 3690 Query 26272 GTCGCCCACTGCGAGTCGTCCGGAAACTGGAGCATCAACACCGGCAACGGGTTCTACGGC 26331 ||||| || |||||| || |||||| ||||||||||||||||| | |||||| Sbjct 3689 GTCGCACAGTGCGAGAGCGGTGGCAACTGGGCGATCAACACCGGCAACGGCTACTACGGT 3630 Query 26332 GGCCTGCAGTTCACGCAGTCCACCTGG 26358 |||||||||||| ||||| ||||||| Sbjct 3629 GGCCTGCAGTTCTCGCAGAGCACCTGG 3603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164053155993760