Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_016762.1 Length=49135 Score E Sequences producing significant alignments: (Bits) Value seq43099 89.7 2e-13 seq46235 82.4 2e-11 >seq43099 Length=1459 Score = 89.7 bits (98), Expect = 2e-13 Identities = 177/256 (69%), Gaps = 17/256 (7%) Strand=Plus/Plus Query 21166 GGCCCGGCGTCACAAGCAGCGCCATGGGTTGAGCCTGCTGGTGGTGGACTACCTGCAGCT 21225 |||||| || | |||||| || || | | | ||| | || | |||||||||||||| Sbjct 1211 GGCCCGACGGCTCAAGCAACGGCACGACCTCAAGCTGATCGTCATCGACTACCTGCAGCT 1270 Query 21226 GCTGGAGAGCTCCGGCAAG----TCCACTCGCACCG--AGGACGTCAGCGACATGTCCCG 21279 | || | ||||||||| || | |||| || |||| ||| ||| | || || Sbjct 1271 GATGTCG---TCCGGCAAGAAGGTCGAGTCGCGCCAGCAGGAGGTCTCGGACTTCTCGCG 1327 Query 21280 CCAGTGCAAGCTGCTGGCGATGGAGCT--TGGTATCCCCGTGATCGTGCTGTCGCAGCTC 21337 | |||||||||||| | ||| || ||| |||||||| | | | | | |||||| Sbjct 1328 TTCGCTCAAGCTGCTGGCCAAGGAACTCATGG--TCCCCGTGGTGGCGATCTGCCAGCTC 1385 Query 21338 AACC--GCTCCCTGGAGCAGCGGCCGAACAAGCGACCGATGATGTCGGACCTGCGCGAGT 21395 |||| | |||| |||||||| | ||||| |||||| |||| ||||| || |||| Sbjct 1386 AACCGTGGTCCC--GAGCAGCGCACCGACAAGAAGCCGATGGTGTCCGACCTCCGTGAGT 1443 Query 21396 CCGGGGCGATCGAGCA 21411 |||| | ||||||| Sbjct 1444 CCGGCTCCCTCGAGCA 1459 >seq46235 Length=1443 Score = 82.4 bits (90), Expect = 2e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 21286 CAAGCTGCTGGCGATGGAGCTTGGTATCCCCGTGATCGTGCTGTCGCAGCTCAACCGCTC 21345 ||||||||| || | |||||| | |||||| ||| | | ||||| ||||| Sbjct 1260 CAAGCTGCTCGCCAAGGAGCTCGACTGCCCCGTCGTCGCGATCAGCCAGCTGAACCGTGG 1319 Query 21346 CCTGGAGCAGCGGCCGAACAAGCGACCGATGATGTCGGACCTGCGCGAGTCCGGGGCGAT 21405 ||||||||| | ||||| ||| | ||||||||||||||||||| || |||| Sbjct 1320 TTCGGAGCAGCGCACCGACAAGACGCCGCAGCTGTCGGACCTGCGCGAGTCGGGCTCGAT 1379 Query 21406 CGAGCAGGACGCCGA 21420 ||||||||||||||| Sbjct 1380 CGAGCAGGACGCCGA 1394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156995902850180