Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_018848.1 Length=37612 Score E Sequences producing significant alignments: (Bits) Value seq49429 123 6e-24 >seq49429 Length=1101 Score = 123 bits (136), Expect = 6e-24 Identities = 217/313 (69%), Gaps = 5/313 (2%) Strand=Plus/Plus Query 30218 CCGAACTCAGGTTCACCCCCGCCGGCGCCGCCGTCGCGAACTTCCGGCTCGCCTCGACCC 30277 ||||||| | |||||||||||||| || || |||||||||||| |||| || || | Sbjct 1 CCGAACTTCGATTCACCCCCGCCGGTGCGGCGGTCGCGAACTTCACCGTCGCGTCCACTC 60 Query 30278 CCCGCACGTTCGACCGCACCGCCAACGAATGGCGAGACGGCGAGACCCTGTTCCTGTCCG 30337 ||||||| ||||| ||| ||||||| ||| |||||||| | |||||||| | Sbjct 61 CCCGCACCTTCGATCGCCAGACCAACGAGTGGAAGGACGGCGACGCGCTGTTCCTCCGCT 120 Query 30338 TCTCCGTATGGCGCCAGCAGGCCGAGAACGTCGCCGGATCCATCCACCGCGGCGACCGCG 30397 | | | ||||| || || ||||||||||||| ||| | ||||||| || | Sbjct 121 GCAACATCTGGCGTGAGGCAGCGGAGAACGTCGCCGAGTCCCTGACTCGCGGCGCACGGG 180 Query 30398 TGATCGTCGTCGGCACCCTCGCCCAGCGCACGTACGAGAAG---GACGGCGAG-CGCCGA 30453 || ||||| ||| ||| ||||| | | ||||| | || || ||| || | Sbjct 181 TGGTCGTCACGGGCCGGCTCCGGCAGCGTTCCTTCGAGACGCGTGAGGGTGAGAAGCGCA 240 Query 30454 GCGTCCTACGAGGTCAAGGCCGAGGAAGTCGGCCCCGCGCTCAAGAACGCGACCGCCACT 30513 ||| | ||| || ||| ||| || |||||||| ||||| ||||||| |||| Sbjct 241 CTGTCGT-CGAACTCGAGGTCGACGAGGTCGGCCCTTCGCTCCGCTACGCGACGGCCAAG 299 Query 30514 GTCACCAAGGCCA 30526 |||| ||||| || Sbjct 300 GTCAACAAGGTCA 312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120149175177560