Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_020483.1 Length=42084 Score E Sequences producing significant alignments: (Bits) Value seq811 132 1e-26 >seq811 Length=1020237 Score = 132 bits (146), Expect = 1e-26 Identities = 252/360 (70%), Gaps = 11/360 (3%) Strand=Plus/Minus Query 15501 AATAGAACCATACAGAGCTAACGCTTATGTACAAAAAACAATGTCAGGTTCTTTTCTAGT 15560 |||||| ||||| ||| |||| | | |||| || ||| || ||||||| ||| |||| Sbjct 843473 AATAGAGCCATATGCAGCAAACGTATTTATACAGAAGACACTGACAGGTTCATTTGTAGT 843414 Query 15561 TAAGAATAAATATTTAGAAAAGTTACTAG-AGAAAAAAGGCATGAACACTGACGCAGTGT 15619 ||||||| ||| |||| ||| ||| |||||| | || || || || | | | Sbjct 843413 ACGAAATAAATTCTTACAAAAATTATTAGCAGAAAAGAATCAAGACAAC-GATAAAATAT 843355 Query 15620 GGCAATCTATTGTAGCACA-GAGAGGTTCTGTATTACATTTAGATGAACTATCTGATTAT 15678 || || ||| | || | ||| |||||||| ||| ||||| || || || Sbjct 843354 GGTCCTCAATTTCAACAAATGAG-GGTTCTGTTCAGCATCTAGATTTTCTTAGCGAGCAT 843296 Query 15679 GAAAAAGATACATTTAAAACATCTATA-GAAATTAATCAGCAATGGATAATAGAACATGC 15737 |||||| |||||||||||| | ||| ||| || |||| |||||||| ||||||||||| Sbjct 843295 GAAAAACTGACATTTAAAACAGC-ATACGAACTTGATCAACAATGGATCATAGAACATGC 843237 Query 15738 GGCAGACAGACAACAATTTATATGTCAAGGTCAGTCAGTAAATGTATTTGTACCTGCTGA 15797 || ||| | | ||| |||||| ||| ||||||||| | || ||||||| | Sbjct 843236 AAGTGATAGAACTCCTTATATTTGTCAATCTCAATCAGTAAATCTGTTCTTACCTGCCAA 843177 Query 15798 TGTAAACATTAAAG--AGTTACATGACATACACATGTTAGCTTGGAAAAGAAAAATTAAA 15855 ||| ||| || | | ||||| | ||||||||| | |||||||||| || |||||| Sbjct 843176 TGT--GCATAAACGTTACTTACACAAGATACACATGCTTGCTTGGAAAA-AAGGATTAAA 843120 Score = 104 bits (114), Expect = 6e-18 Identities = 299/453 (66%), Gaps = 14/453 (3%) Strand=Plus/Plus Query 16592 TGAAGGCTTACAGTTGTTTGCATCATTTGTTATGCTTCTTAACTTCCAAAGATATGGACG 16651 |||||| || || || ||||||||||||| || | || || || ||| | | |||| Sbjct 971321 TGAAGGATTGCAATTATTTGCATCATTTGCAATTTTGCTCAATTTTCAACGGTTTGGAAA 971380 Query 16652 TATGAAGGGTATGTGTCAGATAGTAACTTGGTCTATCA-GAGATGAGAC-----ACACCA 16705 ||||| |||||| | || ||| | ||||||| | || | || || || |||||| Sbjct 971381 AATGAAAGGTATGGGGCAAATAATTGCTTGGTC-AGCACGTGACGAAACCTTGCACACCA 971439 Query 16706 TGTTGAAAGCATGATTAAATTGTTTCATCAAATTATAAAAGAAAACCCAAATATTTGGAC 16765 || || | ||||| ||||| || |||| ||||| || | ||||||| Sbjct 971440 A-TTCAA----TTATTAATTTGTTCAATACGTTTATTAAAGAGAATAATGAAATTTGGAA 971494 Query 16766 AGAAAAATTTAAAGCAAGTATC-TATCAAACAGCTAGAGACATGGTTGACCTTGAAGATA 16824 || | || ||| ||| || ||| || | | || ||||| ||||||||| Sbjct 971495 TGACGAGTTCAAAA-AAGAATTATATTCTGCATGTCGCACTATTGTTGAACTTGAAGATG 971553 Query 16825 AGTTTATTGATTTAGCATTTTCTATGGGTGGTATCAGAGGATTAAAAGCTGATGAAGTTA 16884 | ||||| | | || ||| | | || | | | ||| || || || ||||| Sbjct 971554 AATTTATAAGTCTTGCTTTTGATTTAGGAGATGTTGAAGGGCTATCTGCAGAGGAAGTGC 971613 Query 16885 AAGAGTATATTAGATACATAGCAGATAGAAGACTACTTCAGTTATCTTTAAAACCTAATT 16944 | ||||| | ||||||||| | ||||| || || ||| | | ||| ||| | Sbjct 971614 GCAATTATATACGTTACATAGCAAACAGAAGGTTAACGCAATTAGGTCTTAAATCTATAT 971673 Query 16945 ATGGTGTCAAAGAGAACCCATTAGCGTGGTTAGATTGGGTATTAAATGGCGTAGAACATG 17004 || ||| ||||| ||||| | ||||| | ||| || |||||||||| |||||| Sbjct 971674 ATAATGTTAAAGATAACCCTATTCCGTGGCTTGATGAAATACTAAATGGCGTGGAACATA 971733 Query 17005 CTAATTTCTTTGAGAATAGAGCTACAGAATATA 17037 | ||||||||||| ||||||| ||||| |||| Sbjct 971734 CAAATTTCTTTGAAAATAGAGTAACAGAGTATA 971766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134449146205240