Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq154 93.3 6e-14 >seq154 Length=1683969 Score = 93.3 bits (102), Expect = 6e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || ||||||||||| |||||||| || |||||||| || || Sbjct 578376 ATGCAGATCTTCGTGAAGACATTGACTGGTAAAACTATCACTTTAGAAGTTGAGCCATCC 578435 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || ||| || |||||||| ||||| || |||||||| || Sbjct 578436 GATACCATTGAGAATGTCAAGGCTAAGATTCAAGATAAGGAAGGAATTCCTCCAGACCAG 578495 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || | || | || |||||||| || |||||| Sbjct 578496 CAGCGACTCATCTTCGCTGGTAAGCAACTGGAAGAT 578531 Score = 89.7 bits (98), Expect = 8e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || | || ||||| || || ||||| ||||| || |||| Sbjct 578604 ATGCAGATTTTCGTGAAGACCCTAACAGGAAAGACCATCACATTGGAAGTTGAGCCTTCT 578663 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || ||||| ||| ||||| |||||||||||||| || || ||||| || Sbjct 578664 GATACCATCGAGAACGTAAAAGCCAAAATCCAAGATAAAGAAGGAATTCCCCCAGACCAG 578723 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | || ||||||||||| |||||| | | || | || || || ||| Sbjct 578724 CAGCGACTCATCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACCCTCTCCGACTACAAT 578783 Query 156003 AT 156004 || Sbjct 578784 AT 578785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731310562692000