Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_021298.1 Length=51252 Score E Sequences producing significant alignments: (Bits) Value seq13874 325 1e-84 seq20448 158 4e-34 >seq13874 Length=14992 Score = 325 bits (360), Expect = 1e-84 Identities = 493/697 (71%), Gaps = 16/697 (2%) Strand=Plus/Minus Query 40058 CGGGTAGTCGAACTGCGTGATCGTCGCGCCGTCCTGCGGTCGCACCCACACCGGGATGTG 40117 ||||||||| || ||||| | |||||||||||||| ||| ||||||||| ||| Sbjct 10864 CGGGTAGTCCCACCCGGTGATGATGGCGCCGTCCTGCGGACGCTTCCACACCGGAATGGC 10805 Query 40118 GTCGACCAGAGGCTCGTCGGACATGATCACACCGGCTGCGTGCACACCCATCTGCCGGAC 40177 |||| || |||||| ||||||||| || || || || || ||| | |||| Sbjct 10804 GTCGGTGAGCGGCTCGGAGGACATGATGACCGCGCAGGCATGGACGCCCGCGTTGCGGAT 10745 Query 40178 GAGACCTTCGAGACCGAGCGCGGTGTCGATGACCTCCTTGGCGTCCGGGTCGGAGCCGTA 40237 ||||| ||||| || | ||||||||| || || | ||||||||| ||| || Sbjct 10744 CAGACCCTCGAGGCCCCGAGCGGTGTCGTAGATCTTGGCGACGTCCGGGTTGGACTCGAT 10685 Query 40238 GATGCCCCGGATCTCGGCGGCCTCCTCGTACCGAGGGTGCTCGGCGTTGAAGATCCCGTC 40297 || |||| ||||||||| |||| |||||| |||| || || | ||| ||| | Sbjct 10684 GAGCGAGCGGACCTCGGCGGCTTCCTTGTACCGCTCGTGCGTGGGGTCGGTGATGCCGGC 10625 Query 40298 GAGGGGCATCGAGTTGCCCATCACGTCGGCCGGGTACGCCTTGGTCAGCTTCTCGCCGAC 40357 || | || ||| |||| | | | ||| ||||||||| | || ||| ||| Sbjct 10624 GACCGAGATGTCCTTGGCCATGATGGGCGGCGGCAGCGCCTTGGTGATCTGGTCGGCGAT 10565 Query 40358 CTGGAAG---GGCTTGTCCA---GCACGCGGGCTGCGTCCTTCAT---CGCGTTGCGCGC 40408 |||| |||| | | | |||||||||| | |||||| || ||| ||| | Sbjct 10564 GGCGAAGCCGGGCTGGCCGAACTGCACGCGGGCGGAGTCCTTGATGGCCGCCTTG---GT 10508 Query 40409 CTTGATCCGTCCGTACGTCGCGATCTGCGCGACCTTGTCG--GCCCCGTACTTCCGGGTG 40466 |||||| ||| |||| | ||| || ||| |||| ||||| ||||| |||| Sbjct 10507 CTTGATGGTGCCGAACGTGATCACCTGGGCCACCCGGTCGCTGCCCC--ACTTCTCGGTG 10450 Query 40467 ACGTACTGGATCACCTCGCCACGACGCCGGTCATCGAAGTCGATGTCGACATCGGGCATG 40526 |||| | | || |||||| || || || || |||||||||||||||| |||||||| Sbjct 10449 GCGTAGCGCACCATCTCGCCGCGGCGGCGATCGTCGAAGTCGATGTCGATGTCGGGCATC 10390 Query 40527 GACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGTCCGTGCTCCAGCGGGTCGAGG 40586 ||||||||||||||||| ||||| |||||||||| ||||||||| |||||||||| | Sbjct 10389 GACACGCGCTCGGGGTTGAGGAAGCGCTCGAAGAGCAGTCCGTGCGGGAGCGGGTCGATG 10330 Query 40587 TCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCG 40646 | |||||| || | ||||||| || || || ||||| || || || || || || ||| Sbjct 10329 TTGGTGATGCCCATCGCGTAGGCCACGAGGGACCCGGCGGCCGATCCACGACCCGGTCCG 10270 Query 40647 ACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGAC 40706 || | || ||| ||| ||| ||||| |||| |||| ||||||||||| | | Sbjct 10269 ACGCGGATACCGACCTCGCGCGCGTGCTTGATGAGGTCCCCGACCACGAGGAAGTAGGCC 10210 Query 40707 GGGAAGCCCATCTGGATGATCATGTCGATCTCGTACT 40743 ||||||||||||| || ||| | | |||||||||||| Sbjct 10209 GGGAAGCCCATCTCGAGGATGACGGCGATCTCGTACT 10173 >seq20448 Length=9219 Score = 158 bits (174), Expect = 4e-34 Identities = 286/411 (70%), Gaps = 12/411 (3%) Strand=Plus/Minus Query 41352 TCCTTGTCGAGGCGGGCGTACTTGCCCATCAGCCCCTCCTGGTAGGAGCGAGACGTGATG 41411 |||| ||| | ||| || ||||||||| | ||||||| | | | | | |||| | Sbjct 489 TCCTCGTCCATGCGCGCCCACTTGCCCAGCTGCCCCTCGATGGACGCGAGCGACGACA-- 432 Query 41412 CGCATGA---GGTTGTGAAGGCCCGTCTTGTTCTGCGCGAGCATGGTCATGTGCGTGTAC 41468 || ||| |||| | || || || ||||| ||||| ||||||||||||||||||| Sbjct 431 -GCTTGAACAGGTTCCGCAGACCGGTGGCGTTCTCCGCGACCATGGTCATGTGCGTGTAC 373 Query 41469 GCACCGTTACCCGACACGTCGTAACGCTTCTG-CT-CGGGCGACCCCCACTTGACCCG-G 41525 || ||| | ||||||||||||| |||||| || || || |||||| || || Sbjct 372 GCGCCGCTGCCCGACACGTCGTCCGACTTCTGACTGCGATCG--CCCCACAGCACGCGCT 315 Query 41526 TCAAGGCTTCGCCTGTCGCCGGGGGCGACGTAGGCTTCCATTCCCACGATGGGCTTGATG 41585 || | | || | | || || |||| ||| || || || || | ||| ||||||||| Sbjct 314 TCTTGTCGAAGCGCGACTCC-GGCGCGATGTACGCCTCGATCCCGATGATCGGCTTGATG 256 Query 41586 CCCGCTGCGGTGGCCTGCTTGAACAGCTCGTAGGCACCATGCATGTGGCCGTGGTCGGTC 41645 || || |||||| ||| | | |||| ||| || | ||||| ||||||||||||| Sbjct 255 CCGGCCTTCTTGGCCTCGTTGTAGAACTCGCTGGCCCCGTACATGTTGCCGTGGTCGGTC 196 Query 41646 ACTGCGATGGCTCGCATCCCCTGACGCTTGGCCTCGGCGACCATCTTCTCGATCTTGGCG 41705 | | | | || | |||||| | |||| ||||| |||| || | | ||||||| ||| Sbjct 195 ATTCCCACCGCGCTCATCCCGAGGCGCTGCGCCTCCGCGAACAGCGGCGCGATCTTCGCG 136 Query 41706 TGCCCGTCGAGGAGCGAGAACTCTGAGTGGGCATGGAGATGAACGAACTCC 41756 ||||| || | ||| |||| | ||| |||||||||||||| ||| Sbjct 135 GCGCCGTCCAGCATGGAGTACTCGGTGTGATTGTGGAGATGAACGAAGTCC 85 Score = 132 bits (146), Expect = 2e-26 Identities = 132/171 (77%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 39317 CTTGTTCTTGTCGTCGCCCACCGAGGTGAGCGCAGCCGCCATGTACTCGGCTGGGTAGTG 39376 ||||| |||||||||||| || || |||||| | ||||||||||||| || ||||||| Sbjct 3128 CTTGTCCTTGTCGTCGCCGACGGACGTGAGCAGACCCGCCATGTACTCCGCCGGGTAGTT 3069 Query 39377 CGTCTTCAGCCACGCCGTGCGGTACGCGATGAGTCCGTACGCCGCCGAGTGCGCCTTGTT 39436 | ||| || | | || | ||||| || ||| ||||| |||| | ||||| |||||| Sbjct 3068 GGCCTTGAGATAGCCGGTCCAGTACGAGACGAGCCCGTATCCCGCGGCGTGCGACTTGTT 3009 Query 39437 GAAGGCGTAGCCAGCGAACGGGACCAGCACGTCCCACACTGCCTGGATGGC 39487 ||| |||||||| |||||||||| | |||||||| |||| |||||| Sbjct 3008 GAACGCGTAGCCCGCGAACGGGAGGATGGTGTCCCACAGAGCCTTGATGGC 2958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163765365879160