Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_021304.1 Length=51552 Score E Sequences producing significant alignments: (Bits) Value seq13874 320 6e-83 seq20448 167 8e-37 >seq13874 Length=14992 Score = 320 bits (354), Expect = 6e-83 Identities = 492/697 (71%), Gaps = 16/697 (2%) Strand=Plus/Minus Query 40346 CGGGTAGTCGAACTGCGTGATCGTCGCGCCGTCCTGCGGCCGAACCCACACCGGGATGTG 40405 ||||||||| || ||||| | |||||||||||||| || ||||||||| ||| Sbjct 10864 CGGGTAGTCCCACCCGGTGATGATGGCGCCGTCCTGCGGACGCTTCCACACCGGAATGGC 10805 Query 40406 GTCGACCAGCGGCTCGTCGGACATGATCACACCGGCTGCGTGCACACCCATCTGCCGGAC 40465 |||| ||||||||| ||||||||| || || || || || ||| | |||| Sbjct 10804 GTCGGTGAGCGGCTCGGAGGACATGATGACCGCGCAGGCATGGACGCCCGCGTTGCGGAT 10745 Query 40466 GAGACCTTCGAGACCGAGCGCGGTGTCGATGACCTCCTTGGCGTCCGGGTCGGAGCCGTA 40525 ||||| ||||| || | ||||||||| || || | ||||||||| ||| || Sbjct 10744 CAGACCCTCGAGGCCCCGAGCGGTGTCGTAGATCTTGGCGACGTCCGGGTTGGACTCGAT 10685 Query 40526 GATGCCCCGGATCTCGGCGGCCTCCTCGTACCGAGGGTGCTCGGCGTTGAAGATCCCGTC 40585 || |||| ||||||||| |||| |||||| |||| || || | ||| ||| | Sbjct 10684 GAGCGAGCGGACCTCGGCGGCTTCCTTGTACCGCTCGTGCGTGGGGTCGGTGATGCCGGC 10625 Query 40586 GAGGGGCATCGAGTTGCCCATCACGTCGGCCGGGTACGCCTTGGTCAGCTTCTCGCCGAC 40645 || | || ||| |||| | | | ||| ||||||||| | || ||| ||| Sbjct 10624 GACCGAGATGTCCTTGGCCATGATGGGCGGCGGCAGCGCCTTGGTGATCTGGTCGGCGAT 10565 Query 40646 CTGGAAG---GGCTTGTCCA---GCACGCGGGCTGCGTCCTTCAT---CGCGTTGCGCGC 40696 |||| |||| | | | |||||||||| | |||||| || ||| ||| | Sbjct 10564 GGCGAAGCCGGGCTGGCCGAACTGCACGCGGGCGGAGTCCTTGATGGCCGCCTTG---GT 10508 Query 40697 CTTGATCCGTCCGTACGTCGCGATCTGCGCGACCTTGTCG--GCCCCGTACTTCCGGGTG 40754 |||||| ||| |||| | ||| || ||| |||| ||||| ||||| |||| Sbjct 10507 CTTGATGGTGCCGAACGTGATCACCTGGGCCACCCGGTCGCTGCCCC--ACTTCTCGGTG 10450 Query 40755 ACGTACTGGATCACCTCGCCACGACGCCGGTCATCGAAGTCGATGTCGACATCGGGCATG 40814 |||| | | || |||||| || || || || |||||||||||||||| |||||||| Sbjct 10449 GCGTAGCGCACCATCTCGCCGCGGCGGCGATCGTCGAAGTCGATGTCGATGTCGGGCATC 10390 Query 40815 GACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGG 40874 ||||||||||||||||| ||||| |||||||||| || |||||| |||||||||| | Sbjct 10389 GACACGCGCTCGGGGTTGAGGAAGCGCTCGAAGAGCAGTCCGTGCGGGAGCGGGTCGATG 10330 Query 40875 TCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCG 40934 | |||||| || | ||||||| || || || ||||| || || || || || || ||| Sbjct 10329 TTGGTGATGCCCATCGCGTAGGCCACGAGGGACCCGGCGGCCGATCCACGACCCGGTCCG 10270 Query 40935 ACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGAC 40994 || | || ||| ||| ||| ||||| |||| |||| ||||||||||| | | Sbjct 10269 ACGCGGATACCGACCTCGCGCGCGTGCTTGATGAGGTCCCCGACCACGAGGAAGTAGGCC 10210 Query 40995 GGGAAGCCCATCTGGATGATCATGTCGATCTCGTACT 41031 ||||||||||||| || ||| | | |||||||||||| Sbjct 10209 GGGAAGCCCATCTCGAGGATGACGGCGATCTCGTACT 10173 >seq20448 Length=9219 Score = 167 bits (184), Expect = 8e-37 Identities = 282/401 (70%), Gaps = 8/401 (2%) Strand=Plus/Minus Query 41645 GTCCATGCGCGGGTACTTCCCGAGCAGGCCCTCCTGGTACGACCGCGAGCTGAGCTTCAT 41704 ||||||||||| |||| || ||| | ||||| | ||| |||| ||||| | Sbjct 484 GTCCATGCGCGCCCACTTGCCCAGCTGCCCCTCGATGGACGCGAGCGACGACAGCTTGAA 425 Query 41705 GAGGTTGTGCAGGCCGGTCTTGTTCGTGGAGAGGATCGTGAGGTGCGTGTACGCACCCCG 41764 ||||| |||| ||||| |||| | || || || | |||||||||||| || | Sbjct 424 CAGGTTCCGCAGACCGGTGGCGTTCTCCGCGACCATGGTCATGTGCGTGTACGCGCCGCT 365 Query 41765 ACCGCTCACGTCGTACCGCTTCTGGTCTTCCGT-GCCCCACTGGACTCGCTCCTGGTCGA 41823 || |||||||| | |||||| || | | ||||||| | || |||| || ||||| Sbjct 364 GCCCGACACGTCGTCCGACTTCTGA-CTGCGATCGCCCCACAGCACGCGCTTCTTGTCGA 306 Query 41824 AGCGGGAGTCCGGGGCCATGTACGCCTCGATGCCGATGATCGGCTTGACCCCAGCGGCCT 41883 |||| || ||||| || |||||||||||||| |||||||||||||||| || || || Sbjct 305 AGCGCGACTCCGGCGCGATGTACGCCTCGATCCCGATGATCGGCTTGATGCCGGCCTTCT 246 Query 41884 GCGCCGAGGTGAAGAAGTCGTACGCACCGTGAAGGTTGCCGTGGTCCGTCACTGCGACGG 41943 ||| | || |||| ||| || |||| | |||||||||||| |||| | | || | Sbjct 245 TGGCCTCGTTGTAGAACTCGCTGGCCCCGTACATGTTGCCGTGGTCGGTCATTCCCACCG 186 Query 41944 CAGGAGCA--CCCTGGCG-GGCGACCTCGGCGACCATCTGCTTCATCCGAGCGGCCCCGT 42000 | | || || |||| ||| |||| |||| || | || ||| ||||| |||| Sbjct 185 C--GCTCATCCCGAGGCGCTGCG-CCTCCGCGAACAGCGGCGCGATCTTCGCGGCGCCGT 129 Query 42001 CGAGGAGGCTGTACTCGGAGTGGTTGTGCAGGTGGACGAAG 42041 | || | | |||||||| ||| ||||| || || |||||| Sbjct 128 CCAGCATGGAGTACTCGGTGTGATTGTGGAGATGAACGAAG 88 Score = 132 bits (146), Expect = 2e-26 Identities = 132/171 (77%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 39605 CTTGTTCTTGTCGTCGCCCACCGAGGTGAGCGCAGCCGCCATGTACTCGGCTGGGTAGTG 39664 ||||| |||||||||||| || || |||||| | ||||||||||||| || ||||||| Sbjct 3128 CTTGTCCTTGTCGTCGCCGACGGACGTGAGCAGACCCGCCATGTACTCCGCCGGGTAGTT 3069 Query 39665 CGTCTTCAGCCACGCCGTGCGGTACGCGATGAGTCCGTACGCCGCCGAGTGCGCCTTGTT 39724 | ||| || | | || | ||||| || ||| ||||| |||| | ||||| |||||| Sbjct 3068 GGCCTTGAGATAGCCGGTCCAGTACGAGACGAGCCCGTATCCCGCGGCGTGCGACTTGTT 3009 Query 39725 GAAGGCGTAGCCAGCGAACGGGACCAGCACGTCCCACACTGCCTGGATGGC 39775 ||| |||||||| |||||||||| | |||||||| |||| |||||| Sbjct 3008 GAACGCGTAGCCCGCGAACGGGAGGATGGTGTCCCACAGAGCCTTGATGGC 2958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164724666261160