Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_021309.1 Length=74711 Score E Sequences producing significant alignments: (Bits) Value seq9379 131 8e-26 seq49429 125 3e-24 >seq9379 Length=20973 Score = 131 bits (144), Expect = 8e-26 Identities = 191/270 (71%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 65278 AAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAG 65337 ||||| |||| |||||||||||| || |||||||| |||| ||||||| || |||| Sbjct 17417 AAGGCGTTGAAGTTCTACGCCTCCGTACGCATGGACATCCGCCGCATCGAAACGCTGAAG 17476 Query 65338 GAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAAGTCGTCAAGAACAAGCTGGCC 65397 || ||| || || || |||||||| ||||| || || || |||||||||||| || | Sbjct 17477 GACGGCACGGACGCGGTGGGCAACCGGACCCGCGTCAAGGTGGTCAAGAACAAGGTGTCG 17536 Query 65398 CCGCCGCACCGCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTC 65457 ||||| | | || |||||| | || ||||||| |||||||| |||| | Sbjct 17537 CCGCCCTTCAAGCAGGCGGAGTTCGACATCCTGTACGGCAAGGGCATCAGCAAGGAGGGC 17596 Query 65458 GAACTCCTCGACCTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAG 65517 || ||||| ||| |||| ||| || | ||| ||||| ||| | ||||||| Sbjct 17597 TCGCTGATCGACATGGGCGTGGAGCACGGTTTCGTGCGCAAGTCCGGCTCGTGGTTCACC 17656 Query 65518 TACGGGGACAAGAACGTCGCTCAGGGCAAG 65547 |||| || | | | ||| ||||||||| Sbjct 17657 TACGAGGGCGATCAGCTCGGCCAGGGCAAG 17686 >seq49429 Length=1101 Score = 125 bits (138), Expect = 3e-24 Identities = 198/283 (70%), Gaps = 3/283 (1%) Strand=Plus/Plus Query 59225 CCGAGCTGCGGTTCACCCAAGGTGGGCAGGCCGTCGCCAACTTCACCGTCGTGTCCAACG 59284 |||| || || ||||||| | || ||| ||||| ||||||||||||| ||||| Sbjct 1 CCGAACTTCGATTCACCCCCGCCGGTGCGGCGGTCGCGAACTTCACCGTCGCGTCCACTC 60 Query 59285 AACGCCGCCGCGACGCCCAGGGCAAC---TGGGTCGACGGCGACGCCACATTCCTCCGCT 59341 ||| | ||| |||| |||| ||| ||||||||||| |||||||||| Sbjct 61 CCCGCACCTTCGATCGCCAGACCAACGAGTGGAAGGACGGCGACGCGCTGTTCCTCCGCT 120 Query 59342 GCACCATCTGGCGCGACGCCGCCGAGAACGTGGCGGAAAGCCTCCAGAAAGGCCAGCGCG 59401 ||| ||||||||| || || || |||||||| || || ||| ||| || | Sbjct 121 GCAACATCTGGCGTGAGGCAGCGGAGAACGTCGCCGAGTCCCTGACTCGCGGCGCACGGG 180 Query 59402 TCATCGTGCATGGCTACCTCAAGCAGCGCTCCTTCGAGACCAAGGAGGGCGACAAGCGCA 59461 | |||| ||| ||| |||||| ||||||||||| ||||| || ||||||| Sbjct 181 TGGTCGTCACGGGCCGGCTCCGGCAGCGTTCCTTCGAGACGCGTGAGGGTGAGAAGCGCA 240 Query 59462 CCGTCATCGAGGTGGAGGTAGACGAGATCGGCCCGTCGCTGCG 59504 | ||| |||| | ||||| |||||| ||||||| ||||| || Sbjct 241 CTGTCGTCGAACTCGAGGTCGACGAGGTCGGCCCTTCGCTCCG 283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 238771677795040