Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq13874 311 3e-80 seq20448 159 1e-34 >seq13874 Length=14992 Score = 311 bits (344), Expect = 3e-80 Identities = 490/697 (70%), Gaps = 16/697 (2%) Strand=Plus/Minus Query 39806 CGGGTAGTCGAACTGCGTGATCGTCGCGCCGTCCTGCGGCCGAACCCACACCGGGATGTG 39865 ||||||||| || ||||| | |||||||||||||| || ||||||||| ||| Sbjct 10864 CGGGTAGTCCCACCCGGTGATGATGGCGCCGTCCTGCGGACGCTTCCACACCGGAATGGC 10805 Query 39866 GTCGACCAGAGGCTCGTCGGACATGATCACACCGGCTGCGTGCACACCCATCTGCCGGAC 39925 |||| || |||||| ||||||||| || || || || || ||| | |||| Sbjct 10804 GTCGGTGAGCGGCTCGGAGGACATGATGACCGCGCAGGCATGGACGCCCGCGTTGCGGAT 10745 Query 39926 GAGACCTTCGAGACCGAGCGCGGTGTCGATGACCTCCTTGGCGTCCGGGTCGGAGCCGTA 39985 ||||| ||||| || | ||||||||| || || | ||||||||| ||| || Sbjct 10744 CAGACCCTCGAGGCCCCGAGCGGTGTCGTAGATCTTGGCGACGTCCGGGTTGGACTCGAT 10685 Query 39986 GATGCCCCGGATCTCGGCGGCCTCCTCGTACCGAGGGTGCTCGGCGTTGAAGATGCCTTC 40045 || |||| ||||||||| |||| |||||| |||| || || | |||||| | Sbjct 10684 GAGCGAGCGGACCTCGGCGGCTTCCTTGTACCGCTCGTGCGTGGGGTCGGTGATGCCGGC 10625 Query 40046 GAGGGGCATCGAGTTGCCCATCACGTCGGCCGGGTACGCCTTGGTCAGCTTCTCGCCGAC 40105 || | || ||| |||| | | | ||| ||||||||| | || ||| ||| Sbjct 10624 GACCGAGATGTCCTTGGCCATGATGGGCGGCGGCAGCGCCTTGGTGATCTGGTCGGCGAT 10565 Query 40106 CTGGAAG---GGCTTGTCGA---GCACGCGAGCCGCGTCCTTCAT---CGCGTTGCGCGC 40156 |||| |||| | ||| ||||||| || | |||||| || ||| ||| | Sbjct 10564 GGCGAAGCCGGGCTGGCCGAACTGCACGCGGGCGGAGTCCTTGATGGCCGCCTTG---GT 10508 Query 40157 CTTGATCCGTCCGTACGTCGCGATCTGCGCGACCTTGTCG--GCCCCGTACTTCCGGGTG 40214 |||||| ||| |||| | ||| || ||| |||| ||||| ||||| |||| Sbjct 10507 CTTGATGGTGCCGAACGTGATCACCTGGGCCACCCGGTCGCTGCCCC--ACTTCTCGGTG 10450 Query 40215 ACGTACTGGATGACCTCGCCACGACGCCGGTCATCGAAGTCGATGTCGACATCGGGCATG 40274 |||| | | | |||||| || || || || |||||||||||||||| |||||||| Sbjct 10449 GCGTAGCGCACCATCTCGCCGCGGCGGCGATCGTCGAAGTCGATGTCGATGTCGGGCATC 10390 Query 40275 GACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGG 40334 ||||||||||||||||| |||||||||||||||| || |||||| |||||||||| | Sbjct 10389 GACACGCGCTCGGGGTTGAGGAAGCGCTCGAAGAGCAGTCCGTGCGGGAGCGGGTCGATG 10330 Query 40335 TCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCG 40394 | |||||| || | ||||||| || || || ||||| || || || || || || ||| Sbjct 10329 TTGGTGATGCCCATCGCGTAGGCCACGAGGGACCCGGCGGCCGATCCACGACCCGGTCCG 10270 Query 40395 ACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGAC 40454 || | || ||| ||| ||| ||||| |||| |||| ||||||||||| | | Sbjct 10269 ACGCGGATACCGACCTCGCGCGCGTGCTTGATGAGGTCCCCGACCACGAGGAAGTAGGCC 10210 Query 40455 GGGAACCCCATCTGGATGATCATGTCGATCTCGTACT 40491 ||||| ||||||| || ||| | | |||||||||||| Sbjct 10209 GGGAAGCCCATCTCGAGGATGACGGCGATCTCGTACT 10173 >seq20448 Length=9219 Score = 159 bits (176), Expect = 1e-34 Identities = 265/381 (70%), Gaps = 4/381 (1%) Strand=Plus/Minus Query 41105 GTCCATGCGCGGGTACTTCCCGAGCAGGCCCTCCTGGTACGACCGAGAGCTGA--GCTTC 41162 ||||||||||| |||| || ||| | ||||| | ||| |||| | || |||| Sbjct 484 GTCCATGCGCGCCCACTTGCCCAGCTGCCCCTCGATGGACG--CGAGCGACGACAGCTTG 427 Query 41163 ATGAGGTTGTGGAGCCCGGTCTTGTTCGTGGAGAGGATCGTGAGGTGCGTGTACGCGCCG 41222 | ||||| | || ||||| |||| | || || || | |||||||||||||||| Sbjct 426 AACAGGTTCCGCAGACCGGTGGCGTTCTCCGCGACCATGGTCATGTGCGTGTACGCGCCG 367 Query 41223 TTGCCCGACACGTCGTAACGCTTCTGTTCGGGGGCTCCCCACTTGACGCGCTCCTGGCTC 41282 ||||||||||||||| |||||| | | | |||||| ||||||| || | Sbjct 366 CTGCCCGACACGTCGTCCGACTTCTGACTGCGATCGCCCCACAGCACGCGCTTCTTGTCG 307 Query 41283 TGCCTCTTGTCGGGTGCCATGTAGGCTTCGATCCCGATCACGGGGATGATGCCAGCCTCG 41342 | | || || || ||||| || ||||||||||| | || ||||||| |||| Sbjct 306 AAGCGCGACTCCGGCGCGATGTACGCCTCGATCCCGATGATCGGCTTGATGCCGGCCTTC 247 Query 41343 GTCGCGGCCTTGTAGAACTCGTAGGACCCGTGCATCTGGCCGTGGTCTGTGATGGCCAGA 41402 | || | |||||||||||| || ||||| ||| | ||||||||| || || ||| Sbjct 246 TTGGCCTCGTTGTAGAACTCGCTGGCCCCGTACATGTTGCCGTGGTCGGTCATTCCCACC 187 Query 41403 GCCCTCATCCCCTGGCGCTTCGCCTCGGCCACCATCTTGGCGATCTTGGCGTGCCCGTCG 41462 || |||||||| |||||| |||||| || | || | |||||||| ||| ||||| Sbjct 186 GCGCTCATCCCGAGGCGCTGCGCCTCCGCGAACAGCGGCGCGATCTTCGCGGCGCCGTCC 127 Query 41463 AGGAGTGAGAACTCCGAGTGA 41483 || | ||| |||| | |||| Sbjct 126 AGCATGGAGTACTCGGTGTGA 106 Score = 129 bits (142), Expect = 2e-25 Identities = 131/171 (77%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 39065 CTTGTTCTTGTCGTCGCCCACCGAGGTGAGCGCAGCCGCCATGTACTCGGCCGGGTAGTG 39124 ||||| |||||||||||| || || |||||| | ||||||||||||| |||||||||| Sbjct 3128 CTTGTCCTTGTCGTCGCCGACGGACGTGAGCAGACCCGCCATGTACTCCGCCGGGTAGTT 3069 Query 39125 CGTCTTCAACCACGCCGTGCGGTACGCGATGAGTCCGTACGCCGCCGAGTGCGCCTTGTT 39184 | ||| | | | || | ||||| || ||| ||||| |||| | ||||| |||||| Sbjct 3068 GGCCTTGAGATAGCCGGTCCAGTACGAGACGAGCCCGTATCCCGCGGCGTGCGACTTGTT 3009 Query 39185 GAAGGCGTAGCCAGCGAAGGGGACCAGCACGTCCCACACTGCCTGGATGGC 39235 ||| |||||||| ||||| |||| | |||||||| |||| |||||| Sbjct 3008 GAACGCGTAGCCCGCGAACGGGAGGATGGTGTCCCACAGAGCCTTGATGGC 2958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163205773989660