Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq254 109 7e-18 seq268 102 1e-15 >seq254 Length=3229631 Score = 109 bits (120), Expect = 7e-18 Identities = 154/216 (71%), Gaps = 3/216 (1%) Strand=Plus/Plus Query 869183 TCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTG 869242 ||||| || ||||| ||| ||||| |||| || |||||||||||||| ||||||||| Sbjct 2115754 TCGTCACGTGAGATCAGTTCATTGCTGAAGGTTAGTCCGGGCATGAGGCCACGCTTCTTG 2115813 Query 869243 AGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCG 869302 ||||| ||||||| ||| || || ||||| ||||| |||||||| || || || | Sbjct 2115814 AGCCAGAAGATGGAAGCGAAGCTACCGGAGAAGAAGATACCCTCGACTGCAGCGAACGCT 2115873 Query 869303 ATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCG 869362 | | ||||| |||| || | | ||| || |||||||| || ||||| || Sbjct 2115874 ACAATACGCTCACCAAACGTTGC---GGTCTCGCTGGCGATCCACTGCAATGCCCAATCA 2115930 Query 869363 GCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG 869398 || || | | || | |||| || ||||||||| Sbjct 2115931 GCTTTGCGCTTGACACAGGGCATTGTTTCGATGGCG 2115966 >seq268 Length=1151025 Score = 102 bits (112), Expect = 1e-15 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| ||| || ||| | || | ||||||||||||||||| || | || Sbjct 979782 GCTTGGCCAACTCGTCGGGCAACAGGAGCCTGACGGCGGTCTGGATCTCCCGTGACGTGA 979723 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || |||||||| |||| ||||| || ||| |||| | | ||||| | || | Sbjct 979722 TAGTCGACCGCTTGTTGTAGTGTGCCAGGCGAGAGGCTTCGGCGGCTATGCGCTTGAATA 979663 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||| ||||| | |||| |||| | || ||| |||| Sbjct 979662 TGTCGTTCACGAAGCTGTTCATGATGGACATGGCCTTGCTGGAAACACCGGTGTCAGGGT 979603 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | ||||| || || |||||||| ||| Sbjct 979602 GGACCTGTTTCAGTACCTTGTAAATG 979577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6102102890404290