Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq154 129 5e-25 seq1481 114 1e-20 seq204 86.0 6e-12 >seq154 Length=1683969 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA-C 24762 ||||||||||| | ||||| || || || ||||| || || | ||||| | ||||| | Sbjct 579569 ATGCAGATCTTCGTGAAAACCCTTACAGGAAAAACCATCACCTTGGAAGTTG-AGCCATC 579627 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| || | || | || || ||||||||||| || |||||||| ||||| || || Sbjct 579628 CGATACTATTGAGAATGTTAAGGCCAAGATCCAAGATAAGGAAGGAATTCCTCCAGACCA 579687 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || | ||||| || || ||||||||||| ||| | | | | || || || || Sbjct 579688 GCAGCGACTCATCTTCGCTGGTAAACAGCTGGAAGATGGCCGTACCCTCTCTGACTACAA 579747 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| ||||| || |||||||| ||||| |||| ||||| Sbjct 579748 CATCCAGAAGGAGTCGACCCTCCACTTGGTCCTGCGACTGCGAGGAGG 579795 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA-C 24762 ||||||||||| | || || | ||||||||||| || || | ||||| | ||||| | Sbjct 580025 ATGCAGATCTTCGTGAAGACATTGACCGGTAAAACCATCACTTTGGAAGTTG-AGCCATC 580083 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| || | || | || || ||||| ||||| || |||||||| || || ||||| Sbjct 580084 CGATACCATTGAGAATGTCAAGGCTAAGATTCAAGATAAGGAAGGAATTCCCCCAGATCA 580143 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || | ||||| || || || |||||||| ||| | | | | || || || || Sbjct 580144 GCAGCGACTTATCTTCGCTGGAAAGCAGCTGGAAGATGGCCGTACCCTCTCTGACTACAA 580203 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| || || || |||||||| ||||| |||| ||||| Sbjct 580204 CATCCAGAAGGAGTCAACCCTCCACTTGGTCCTGCGACTGCGAGGAGG 580251 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA-C 24762 ||||||||||| | || || | || ||||||||||| || | ||||| | ||||| | Sbjct 578376 ATGCAGATCTTCGTGAAGACATTGACTGGTAAAACTATCACTTTAGAAGTTG-AGCCATC 578434 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| || | || | || || ||||| ||||| || |||||||| ||||| || || Sbjct 578435 CGATACCATTGAGAATGTCAAGGCTAAGATTCAAGATAAGGAAGGAATTCCTCCAGACCA 578494 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || | ||||| || || || || ||||| ||| | | | | || || || || Sbjct 578495 GCAGCGACTCATCTTCGCTGGTAAGCAACTGGAAGATGGCCGTACCCTCTCCGACTACAA 578554 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| || || || |||||||| ||||| | || ||||| Sbjct 578555 CATCCAGAAGGAGTCAACCCTCCACTTGGTCCTGCGACTTCGAGGAGG 578602 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| || || || ||||| || || | ||||| || |||| | Sbjct 578832 ATGCAGATCTTCGTGAAAACCCTTACAGGAAAAACCATCACCTTGGAAGTTGA-GCCATC 578890 Query 24764 -GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || | || || ||||||||||| || |||||||| ||||| || || Sbjct 578891 TGATACTATTGAGAATGTTAAGGCCAAGATCCAAGATAAGGAAGGAATTCCTCCAGACCA 578950 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || | ||||| || || || |||||||| ||| | | |||| || || || Sbjct 578951 GCAGCGACTCATCTTCGCTGGAAAGCAGCTGGAAGATGGCCGTACTCTGTCTGACTACAA 579010 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || || || || || || |||||||| ||||| | || ||||| Sbjct 579011 CATCCAGAAAGAGTCCACCCTCCACTTGGTCCTGCGACTTCGAGGAGG 579058 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || ||||| || || || || || | ||||| || | | Sbjct 578604 ATGCAGATTTTCGTGAAGACCCTAACAGGAAAGACCATCACATTGGAAGTTGAGCCTTCT 578663 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | |||||| || |||||||| ||||||||||| || || || || Sbjct 578664 GATACCATCGAGAACGTAAAAGCCAAAATCCAAGATAAAGAAGGAATTCCCCCAGACCAG 578723 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| || || || |||||||| ||| | | | | || || || || Sbjct 578724 CAGCGACTCATCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACCCTCTCCGACTACAAT 578783 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || |||||||| ||||| | || ||||| Sbjct 578784 ATCCAGAAGGAGTCAACCCTCCACTTGGTCCTGCGACTTCGAGGAGG 578830 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA-C 24762 |||||||| || | || || | ||||||||||| || || | ||||| | ||||| | Sbjct 579797 ATGCAGATTTTCGTGAAGACATTGACCGGTAAAACCATCACTTTGGAAGTTG-AGCCATC 579855 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || | || || || || ||||| || |||||||| ||||| || || Sbjct 579856 TGATACCATTGAGAATGTCAAGGCCAAAATTCAAGATAAGGAAGGAATTCCTCCAGACCA 579915 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || | ||||| || || || || ||||| ||| | | | |||| || || || Sbjct 579916 GCAGCGACTCATCTTCGCTGGTAAGCAACTGGAAGATGGCCGTACCCTGTCTGACTACAA 579975 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || || || || || || |||||||| ||||| | || ||||| Sbjct 579976 CATCCAGAAAGAGTCCACCCTCCACTTGGTCCTGCGACTACGAGGAGG 580023 >seq1481 Length=432034 Score = 114 bits (126), Expect = 1e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || ||||| || || ||||| |||||| | || ||||| || | Sbjct 233954 ATGCAGATTTTTGTAAAGACGCTCACAGGAAAAACGATTACGTTGGAGGTAGAGCCCTCT 233895 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| |||||||| ||||| || ||||| ||||| Sbjct 233894 GACACGATCGAGAATGTTAAGGCGAAGATTCAAGACAAGGAAGGGATTCCTCCTGATCAG 233835 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||||||||||| ||| | || ||| ||| |||| || || || Sbjct 233834 CAGCGCCTGATCTTTGCCGGGAAGCAGTTAGAAGATGGCCGAACGTTGTCGGACTACAAT 233775 Query 24884 ATTCAAAA 24891 |||||||| Sbjct 233774 ATTCAAAA 233767 Score = 104 bits (114), Expect = 2e-17 Identities = 105/133 (79%), Gaps = 4/133 (3%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 ||||||||||||||||||||||| || || || || || | ||||| ||||| || ||| Sbjct 222238 AAGATCCAAGACAAAGAAGGAATCCCCCCAGACCAGCAGAGATTGATTTTTGCAGGAAAA 222179 Query 24848 CAGCTGGAGGAT--TCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTAC 24905 ||| |||| ||| ||| | || | || ||||| |||||||||||||| || ||||| | Sbjct 222178 CAGTTGGAAGATGGTCGC-ACACTT-TCTGATTACAACATTCAAAAGGAGTCCACACTTC 222121 Query 24906 ACTTGGTGTTGCG 24918 || | ||| |||| Sbjct 222120 ACCTTGTGCTGCG 222108 >seq204 Length=3085492 Score = 86.0 bits (94), Expect = 6e-12 Identities = 98/129 (76%), Gaps = 6/129 (5%) Strand=Plus/Plus Query 24805 AGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCG 24862 |||||| ||||| ||||| || | |||| ||||| || |||||| |||| ||| ||| Sbjct 1220814 AGGAATTCCTCCTGATCAGCAGAGACTGATTTTTGCTGGTAAACAGTTGGAAGATGGTCG 1220873 Query 24863 AGAAACAT-GTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATT 24921 |||| ||| || |||||||| || ||||| || ||||| |||||||||||| | | Sbjct 1220874 T---ACATTGTCTGACTATAACATCCAGAAGGAGTCCACACTTCACTTGGTGTTGAGGCT 1220930 Query 24922 GCGCGGAGG 24930 ||| || || Sbjct 1220931 GCGAGGGGG 1220939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449552472303600