Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq237 178 1e-39 seq204 82.4 6e-11 >seq237 Length=1926674 Score = 178 bits (196), Expect = 1e-39 Identities = 209/283 (74%), Gaps = 0/283 (0%) Strand=Plus/Minus Query 34204 GGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGATAA 34263 || || || || || || | ||||||||||| || ||| | || | ||| || | Sbjct 1124785 GGAGGATTCTTGAGAATATAAGTGTTGAGCTTGTGGTTGAACTCGAGAGGGCCATGGAAG 1124726 Query 34264 CCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTCAGTC 34323 ||||| || || |||||||| | |||| || ||| || | | |||||||| |||||| Sbjct 1124725 CCGCAAGCCTTACAGCCCTGGCTGATAGTGCCCTTCTTTGTGCTGACGATGAGGTCAGTC 1124666 Query 34324 TCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGGTCC 34383 || || |||||||| | ||||||| ||| ||||||||||||||||| || |||||||| Sbjct 1124665 TCGGGATTGTCACAACCAGGACACAGCACGAACTTGCGGATGAAACCGTCCAGCAGGTCT 1124606 Query 34384 TGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAATCGACC 34443 || | || || || ||||| ||||| |||||||| || || || ||| |||| | | Sbjct 1124605 TGCAGTTTGGAGGCATCATGGGATCCGTTCACGATGAAACGGTCATTCTTGAAATCAAAC 1124546 Query 34444 TGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGT 34486 || || || || ||||| || ||||| ||||| || || |||| Sbjct 1124545 TGAGTCTGTGCTCCCAGTTCACACCCAAAGTATTTGGTTGGGT 1124503 Score = 125 bits (138), Expect = 6e-24 Identities = 125/162 (77%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 34487 AAATGGCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGA 34546 || |||| ||||| ||||| ||||| |||| ||| ||||||||| || ||||| |||| Sbjct 1106591 AAGTGGCAGGACGGCCAAGAGCCTTAGCGACGTCGATCATGTTGACAATAACAGTTTTGA 1106532 Query 34547 TGCCGTTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACG 34606 |||| || || || || |||||||| || |||| | ||||| |||||||| ||||| | Sbjct 1106531 TGCCATTTCCTTTGCCCTCGACCTTAGCCAAGATCCTTGGCATCTTGTAGCGATAGAAGG 1106472 Query 34607 CGTCCGCCACATTGCGGTTAACGTTCACAGTCCCCATCGTGG 34648 | || |||||||||||||| || || | |||||| ||| Sbjct 1106471 CATCACTGACATTGCGGTTAACATTGACGCTGCCCATCTTGG 1106430 >seq204 Length=3085492 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 110387 GATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGAT 110446 ||||| || ||||| |||| ||| ||||||||| |||| |||| | ||| || | || Sbjct 1220827 GATCAGCAGAGACTGATTTTTGCTGGTAAACAGTTGGAAGATGGTCGTACATTGTCTGAC 1220886 Query 110447 TACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || ||||| || || || || || | ||| ||||||| || ||||||||||| Sbjct 1220887 TATAACATCCAGAAGGAGTCCACACTTCACTTGGTGTTGAGGCTGCGAGGGGG 1220939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412532816415410