Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq268 132 8e-25 seq254 118 2e-20 seq3794 87.8 3e-11 >seq268 Length=1151025 Score = 132 bits (146), Expect = 8e-25 Identities = 172/238 (72%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534 ||||| |||||||||||||| || ||||||||| |||||| ||| || ||| | Sbjct 979816 TTGGTCACGGCCTTGGTACCTTCACTCACGGCGTGCTTGGCCAACTCGTCGGGCAACAGG 979757 Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCC 1485594 || | ||||||||||||||||| || | ||| || |||||||| | | ||| Sbjct 979756 AGCCTGACGGCGGTCTGGATCTCCCGTGACGTGATAGTCGACCGCTTGTTGTAGTGTGCC 979697 Query 1485595 AGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATC 1485654 ||||| ||| |||| | | ||||| | || |||||||| || || ||||||||| Sbjct 979696 AGGCGAGAGGCTTCGGCGGCTATGCGCTTGAATATGTCGTTCACGAAGCTGTTCATGATG 979637 Query 1485655 GACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAAA 1485712 ||||| | ||| |||| | || ||| ||||| ||||| || || |||||||||| Sbjct 979636 GACATGGCCTTGCTGGAAACACCGGTGTCAGGGTGGACCTGTTTCAGTACCTTGTAAA 979579 >seq254 Length=3229631 Score = 118 bits (130), Expect = 2e-20 Identities = 156/216 (72%), Gaps = 3/216 (1%) Strand=Plus/Plus Query 794344 TCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTG 794403 ||||| || ||||| ||| ||||| ||| || |||||||||||||| ||||||||| Sbjct 2115754 TCGTCACGTGAGATCAGTTCATTGCTGAAGGTTAGTCCGGGCATGAGGCCACGCTTCTTG 2115813 Query 794404 AGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCG 794463 ||||| ||||||| | ||| || || ||||| ||||| |||||||| || || || | Sbjct 2115814 AGCCAGAAGATGGAAGCGAAGCTACCGGAGAAGAAGATACCCTCGACTGCAGCGAACGCT 2115873 Query 794464 ACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCT 794523 || | ||||| |||| || | | ||| || |||||||| || ||||| || Sbjct 2115874 ACAATACGCTCACCAAACGTTGC---GGTCTCGCTGGCGATCCACTGCAATGCCCAATCA 2115930 Query 794524 GCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCG 794559 || || | | || |||||| || ||||||||| Sbjct 2115931 GCTTTGCGCTTGACACAGGGCATTGTTTCGATGGCG 2115966 >seq3794 Length=62979 Score = 87.8 bits (96), Expect = 3e-11 Identities = 102/136 (75%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 122645 TCCAAGCCCATCAAGGGCACGGCGCGTCGCGGGGCGACACCCAGCGAGGACGCTGCGCTG 122704 || ||||| ||||||||||| || ||||||||||| | ||| ||||| ||| || Sbjct 51687 TCGAAGCCGATCAAGGGCACCCGGCCGCGCGGGGCGACGGCGGGCGCCGACGCCGCGTTG 51746 Query 122705 GCCGCCGAGTTGGCCGCGTGTCCCAAAAC--CTTTGCCGAGAACCTCATGATCGTCGACC 122762 || |||| || ||||| || | || | || |||||||||||||||||||||| Sbjct 51747 CGCGACGAGCTGCTCGCGT--CCGAGAAGGACCGCGCGGAGAACCTCATGATCGTCGACC 51804 Query 122763 TGGTGCGCAACGACCT 122778 | ||||||||||| || Sbjct 51805 TCGTGCGCAACGATCT 51820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7909718193191430