Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_022969.1 Length=76217 Score E Sequences producing significant alignments: (Bits) Value seq9379 140 2e-28 seq49429 122 4e-23 >seq9379 Length=20973 Score = 140 bits (154), Expect = 2e-28 Identities = 193/270 (71%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 66640 AAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAG 66699 ||||| |||| |||||||||||| || |||||||| |||| ||||||| || |||| Sbjct 17417 AAGGCGTTGAAGTTCTACGCCTCCGTACGCATGGACATCCGCCGCATCGAAACGCTGAAG 17476 Query 66700 GAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCC 66759 || ||| || || || |||||||| ||||| || ||||| |||||||||||| || | Sbjct 17477 GACGGCACGGACGCGGTGGGCAACCGGACCCGCGTCAAGGTGGTCAAGAACAAGGTGTCG 17536 Query 66760 CCGCCGCACCGCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTC 66819 ||||| | | || |||||| | || ||||||| |||||||| |||| | Sbjct 17537 CCGCCCTTCAAGCAGGCGGAGTTCGACATCCTGTACGGCAAGGGCATCAGCAAGGAGGGC 17596 Query 66820 GAACTCCTCGACCTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAG 66879 || ||||| ||| |||| ||| || | ||| ||||| ||| | ||||||| Sbjct 17597 TCGCTGATCGACATGGGCGTGGAGCACGGTTTCGTGCGCAAGTCCGGCTCGTGGTTCACC 17656 Query 66880 TACGGGGACAAGAACGTCGCCCAGGGCAAG 66909 |||| || | | | ||| |||||||||| Sbjct 17657 TACGAGGGCGATCAGCTCGGCCAGGGCAAG 17686 >seq49429 Length=1101 Score = 122 bits (134), Expect = 4e-23 Identities = 197/283 (70%), Gaps = 3/283 (1%) Strand=Plus/Plus Query 60389 CCGAGCTGCGGTTCACCCAAGGTGGGCAGGCCGTCGCCAACTTCACCGTCGTGTCCAACG 60448 |||| || || ||||||| | || ||| ||||| ||||||||||||| ||||| Sbjct 1 CCGAACTTCGATTCACCCCCGCCGGTGCGGCGGTCGCGAACTTCACCGTCGCGTCCACTC 60 Query 60449 AACGCCGCCGCGACGCCCAGGGCAAC---TGGGTCGACGGCGACGCCACATTCCTCCGCT 60505 ||| | ||| |||| |||| ||| ||||||||||| |||||||||| Sbjct 61 CCCGCACCTTCGATCGCCAGACCAACGAGTGGAAGGACGGCGACGCGCTGTTCCTCCGCT 120 Query 60506 GCACCATCTGGCGCGACGCCGCCGAGAACGTGGCGGAAAGCCTCCAGAAAGGCCAGCGCG 60565 ||| ||||||||| || || || |||||||| || || ||| ||| || | Sbjct 121 GCAACATCTGGCGTGAGGCAGCGGAGAACGTCGCCGAGTCCCTGACTCGCGGCGCACGGG 180 Query 60566 TCATCGTGCATGGCTACCTCAAGCAGCGCTCCTTCGAGACCAAGGAAGGCGACAAGCGCA 60625 | |||| ||| ||| |||||| ||||||||||| || || || ||||||| Sbjct 181 TGGTCGTCACGGGCCGGCTCCGGCAGCGTTCCTTCGAGACGCGTGAGGGTGAGAAGCGCA 240 Query 60626 CCGTCATCGAGGTGGAGGTAGACGAGATCGGCCCGTCGCTGCG 60668 | ||| |||| | ||||| |||||| ||||||| ||||| || Sbjct 241 CTGTCGTCGAACTCGAGGTCGACGAGGTCGGCCCTTCGCTCCG 283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 243587273289460