Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq204 96.9 3e-15 seq154 89.7 4e-13 >seq204 Length=3085492 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 107670 GATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGAC 107729 |||||||||||||| |||| ||| ||||||||| |||| || | ||| || | ||| Sbjct 1220827 GATCAGCAGAGACTGATTTTTGCTGGTAAACAGTTGGAAGATGGTCGTACATTGTCTGAC 1220886 Query 107730 TACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || ||||| || |||||||| || | ||| |||||||||| |||||||||| Sbjct 1220887 TATAACATCCAGAAGGAGTCCACACTTCACTTGGTGTTGAGGCTGCGAGGGGG 1220939 >seq154 Length=1683969 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || ||||| | ||||| |||||||| ||| | ||| ||| | | Sbjct 579569 ATGCAGATCTTCGTGAAAACCCTTACAGGAAAAACCATCACCTTGGAAGTTGAGCCATCC 579628 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| | | | || || ||||| ||||| ||||| | || || ||| Sbjct 579629 GATACTATTGAGAATGTTAAGGCCAAGATCCAAGATAAGGAAGGAATTCCTCCAGACCAG 579688 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| |||| || | || |||||||||||||| || | | || | | ||||||||| Sbjct 579689 CAGCGACTCATCTTCGCTGGTAAACAGCTGGAAGATGGCCGTACCCTCTCTGACTACAAC 579748 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || |||||||| || | ||| |||| || || ||||||| || Sbjct 579749 ATCCAGAAGGAGTCGACCCTCCACTTGGTCCTGCGACTGCGAGGAGG 579795 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||| || || || ||||||| || ||||| || | ||| ||| || Sbjct 578604 ATGCAGATTTTCGTGAAGACCCTAACAGGAAAGACCATCACATTGGAAGTTGAGCCTTCT 578663 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | |||||| || || ||||||||||| | ||| || ||| Sbjct 578664 GATACCATCGAGAACGTAAAAGCCAAAATCCAAGATAAAGAAGGAATTCCCCCAGACCAG 578723 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| |||| || | || ||||| |||||||| || | | || | | |||||||| Sbjct 578724 CAGCGACTCATCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACCCTCTCCGACTACAAT 578783 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || |||||||| || | ||| |||| || || | ||||| || Sbjct 578784 ATCCAGAAGGAGTCAACCCTCCACTTGGTCCTGCGACTTCGAGGAGG 578830 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || || || || || |||||||| || | ||| ||| | | Sbjct 580025 ATGCAGATCTTCGTGAAGACATTGACCGGTAAAACCATCACTTTGGAAGTTGAGCCATCC 580084 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | || || |||||| ||||| ||||| | ||| |||||| Sbjct 580085 GATACCATTGAGAATGTCAAGGCTAAGATTCAAGATAAGGAAGGAATTCCCCCAGATCAG 580144 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| ||||||| | || || || |||||||| || | | || | | ||||||||| Sbjct 580145 CAGCGACTTATCTTCGCTGGAAAGCAGCTGGAAGATGGCCGTACCCTCTCTGACTACAAC 580204 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || |||||||| || | ||| |||| || || ||||||| || Sbjct 580205 ATCCAGAAGGAGTCAACCCTCCACTTGGTCCTGCGACTGCGAGGAGG 580251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398578461343930