Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq811 246 1e-59 >seq811 Length=1020237 Score = 246 bits (272), Expect = 1e-59 Identities = 307/421 (73%), Gaps = 0/421 (0%) Strand=Plus/Minus Query 188777 TTGGCCCTACTGGTTCAGGTAAAACATTATTTGCTCAAACATTGGCTGATATGTTACATG 188836 |||||||||||||||| ||||| || || | || ||||| | ||| | | | | ||| Sbjct 257743 TTGGCCCTACTGGTTCTGGTAAGACTTTGCTAGCAAAAACACTTGCTAAAGTTTCAGATG 257684 Query 188837 TACCTCTAGCTATCTCTGATGCAACTTCTTTAACAGAAGCTGGTTATGTAGGTGAAGATG 188896 | || | ||||| | ||||| || |||| || || || |||||||||||||| |||| Sbjct 257683 TGCCATTTGCTATGGCCGATGCGACAACTTTGACTGAGGCAGGTTATGTAGGTGATGATG 257624 Query 188897 TGGAAAACGTATTGCTTCGTTTAATCCAAGCAGCTGATTACGATATCGAATTAGCGGAAC 188956 | |||| ||| ||| ||| || | ||||| || |||| ||| | | | || | | Sbjct 257623 TAGAAAGCGTGTTGTCACGTCTATTACAAGCTGCAAATTATGATGTTGCAAAGGCACAGC 257564 Query 188957 GTGGAATTGTATATATCGATGAAGTAGATAAAATTGCTAGAAAATCAGAAAGCACATCCA 189016 ||| || || | |||||||||| |||| || || | ||||| || |||||| | || | Sbjct 257563 ATGGTATAGTGTTTATCGATGAAATAGACAAGATCACAAGAAAGTCTGAAAGCGCTTCAA 257504 Query 189017 TTACCCGAGATGTATCTGGCGAAGGAGTACAGCAAGCTTTATTAAAAATCATTGAAGGTA 189076 | ||||| ||||| || || ||||| || || |||||| || |||||||||| ||||||| Sbjct 257503 TAACCCGTGATGTTTCAGGTGAAGGGGTCCAACAAGCTCTACTAAAAATCATGGAAGGTA 257444 Query 189077 CAGTTGCGAAAGTTCCTCCTCAAGGTGGTCGTAAACACCCTCACCAAGAAATGCTTGAAA 189136 | ||||| | |||||||| ||||| || || |||||||| || ||||| | | || Sbjct 257443 CGGTTGCTTATGTTCCTCCACAAGGAGGGCGAAAACACCCGCAACAAGAGTTTATACAAG 257384 Query 189137 TAGATACAACTAATATCTTGTTTATTCTTGGTGGAGCGTTTGATGGTCTTGAAAACATTA 189196 |||| || | ||| || | |||||| ||| ||||| ||||| || || | || |||| Sbjct 257383 TAGACACTAGTAACATACTATTTATTTGTGGAGGAGCTTTTGAAGGCCTAAATAAAATTA 257324 Query 189197 T 189197 | Sbjct 257323 T 257323 Score = 89.7 bits (98), Expect = 2e-12 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 403938 TGTGCGCCTGTAGCTCAGCTGGATAGAGCACGAGCCTTCTAAGCCCGCGGTCGTAGGTTC 403997 |||| ||| ||||||||| ||||||||||| |||||||||||| |||||||||||| Sbjct 741872 TGTGTGCCCGTAGCTCAGTTGGATAGAGCAACAGCCTTCTAAGCTGTGGGTCGTAGGTTC 741931 Query 403998 GAATCCTACCAGGC 404011 |||||||||| ||| Sbjct 741932 GAATCCTACCGGGC 741945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1590658675877760